Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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bwa-aligner
BWA-MEM2 alignment skill for mapping sequencing reads to reference genomes with optimized parameter selection
a5c-ai/babysitter 514
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ga4gh-standards-validator
GA4GH standards compliance skill for data sharing and interoperability
a5c-ai/babysitter 514
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salmon-quantifier
Salmon pseudo-alignment skill for fast and accurate transcript quantification
a5c-ai/babysitter 514
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acmg-variant-classifier
ACMG/AMP variant classification skill for systematic pathogenicity assessment
a5c-ai/babysitter 514
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string-network-analyzer
STRING protein interaction network skill for functional enrichment and network visualization
a5c-ai/babysitter 514
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structural-variant-detector
Structural variant detection skill for identifying CNVs, inversions, translocations, and complex rearrangements
a5c-ai/babysitter 514
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nextflow-pipeline-executor
Nextflow workflow management skill for reproducible bioinformatics pipelines
a5c-ai/babysitter 514
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samtools-bam-processor
BAM/SAM file manipulation skill for sorting, indexing, filtering, and extracting alignment data
a5c-ai/babysitter 514
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pymol-visualizer
PyMOL molecular visualization skill for structure rendering and analysis
a5c-ai/babysitter 514
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singularity-container-manager
Singularity container management skill for HPC-compatible containerized execution
a5c-ai/babysitter 514
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seurat-single-cell-analyzer
Seurat single-cell analysis skill for clustering, annotation, and trajectory analysis
a5c-ai/babysitter 514
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star-rnaseq-aligner
STAR alignment skill for splice-aware RNA-seq read mapping with comprehensive QC metrics
a5c-ai/babysitter 514
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maxquant-processor
MaxQuant mass spectrometry skill for protein identification and quantification
a5c-ai/babysitter 514
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igv-genome-browser
IGV integration skill for interactive genome visualization and review
a5c-ai/babysitter 514
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megahit-assembler
MEGAHIT metagenomic assembly skill for reconstructing genomes from short reads
a5c-ai/babysitter 514
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deepvariant-caller
DeepVariant deep learning variant calling skill for high-accuracy SNV and indel detection
a5c-ai/babysitter 514
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snakemake-workflow-manager
Snakemake workflow management skill for rule-based pipeline execution
a5c-ai/babysitter 514
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vep-variant-annotator
Variant Effect Predictor skill for comprehensive variant annotation with clinical database integration
a5c-ai/babysitter 514
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gatk-variant-caller
GATK best practices skill for germline and somatic variant calling with joint genotyping
a5c-ai/babysitter 514
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ucsc-genome-browser-querier
UCSC Genome Browser query skill for genome annotation retrieval and track data access
a5c-ai/babysitter 514
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hipaa-compliance-validator
HIPAA compliance validation skill for genomic data handling and audit
a5c-ai/babysitter 514
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tmb-msi-calculator
Tumor mutation burden and microsatellite instability calculation skill for immunotherapy biomarkers
a5c-ai/babysitter 514
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fastqc-quality-analyzer
Sequencing quality control skill for assessing read quality, adapter contamination, and sequence composition
a5c-ai/babysitter 514
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giab-benchmark-validator
Genome in a Bottle benchmark validation skill for pipeline accuracy assessment
a5c-ai/babysitter 514