ReddRadar
Agent skill
ga4gh-standards-validator
GA4GH standards compliance skill for data sharing and interoperability
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/ga4gh-standards-validator
Metadata
Additional technical details for this skill
- tags
-
infrastructure standards ga4gh interoperability
- version
- 1.0
- category
- bioinformatics
SKILL.md
GA4GH Standards Validator Skill
Purpose
Provide GA4GH standards compliance for data sharing and interoperability.
Capabilities
- VCF/BAM format validation
- htsget API compliance
- Beacon protocol testing
- DRS/WES/TES compliance
- Data model validation
- Interoperability testing
Usage Guidelines
- Validate file formats against specifications
- Test API compliance for data sharing
- Implement Beacon for variant queries
- Ensure workflow execution standards compliance
- Validate data models for exchange
- Document compliance status
Dependencies
- GA4GH toolkits
- htslib
- Beacon v2
Process Integration
- Genomic Data Governance (genomic-data-governance)
- Reproducible Research Workflow (reproducible-research)
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