ReddRadar
Agent skill
maxquant-processor
MaxQuant mass spectrometry skill for protein identification and quantification
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/maxquant-processor
Metadata
Additional technical details for this skill
- tags
-
proteomics mass-spectrometry quantification identification
- version
- 1.0
- category
- bioinformatics
SKILL.md
MaxQuant Processor Skill
Purpose
Provide MaxQuant mass spectrometry analysis for protein identification and quantification.
Capabilities
- Andromeda search engine execution
- Label-free quantification (LFQ)
- TMT/iTRAQ labeled quantification
- Match between runs
- FDR control and filtering
- PTM site localization
Usage Guidelines
- Configure search parameters for experiment type
- Select appropriate quantification method
- Enable match between runs for improved quantification
- Apply FDR filtering at protein and peptide level
- Localize PTM sites accurately
- Document database and parameter versions
Dependencies
- MaxQuant
- MSFragger
- Proteome Discoverer
Process Integration
- Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
- Multi-Omics Data Integration (multi-omics-integration)
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