ReddRadar
Agent skill
ucsc-genome-browser-querier
UCSC Genome Browser query skill for genome annotation retrieval and track data access
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/ucsc-genome-browser-querier
Metadata
Additional technical details for this skill
- tags
-
infrastructure annotation ucsc tracks
- version
- 1.0
- category
- bioinformatics
SKILL.md
UCSC Genome Browser Querier Skill
Purpose
Provide UCSC Genome Browser queries for genome annotation retrieval and track data access.
Capabilities
- Track data retrieval
- Custom track upload
- Genome annotation queries
- Conservation score extraction
- Table browser queries
- bigWig/bigBed handling
Usage Guidelines
- Query relevant annotation tracks
- Upload custom data for visualization
- Extract conservation scores for analysis
- Use Table Browser for data extraction
- Handle bigWig/bigBed formats efficiently
- Document genome assembly versions
Dependencies
- UCSC API
- kent utilities
- pyBigWig
Process Integration
- Whole Genome Sequencing Pipeline (wgs-analysis-pipeline)
- RNA-seq Differential Expression Analysis (rnaseq-differential-expression)
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