ReddRadar
Agent skill
singularity-container-manager
Singularity container management skill for HPC-compatible containerized execution
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/singularity-container-manager
Metadata
Additional technical details for this skill
- tags
-
infrastructure containers singularity hpc
- version
- 1.0
- category
- bioinformatics
SKILL.md
Singularity Container Manager Skill
Purpose
Provide Singularity container management for HPC-compatible containerized execution.
Capabilities
- Container building from recipes
- Registry pull and caching
- Bind mount configuration
- GPU passthrough
- MPI integration
- Security compliance for HPC
Usage Guidelines
- Build containers from definition files
- Cache containers for repeated use
- Configure bind mounts appropriately
- Enable GPU for accelerated workloads
- Integrate with MPI for parallel computing
- Ensure HPC security compliance
Dependencies
- Singularity/Apptainer
- Docker
- BioContainers
Process Integration
- Reproducible Research Workflow (reproducible-research)
- All analysis pipelines
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