ReddRadar
Agent skill
string-network-analyzer
STRING protein interaction network skill for functional enrichment and network visualization
Install this agent skill to your Project
npx add-skill https://github.com/a5c-ai/babysitter/tree/main/library/specializations/domains/science/bioinformatics/skills/string-network-analyzer
Metadata
Additional technical details for this skill
- tags
-
proteomics network interaction functional
- version
- 1.0
- category
- bioinformatics
SKILL.md
STRING Network Analyzer Skill
Purpose
Provide STRING protein interaction network analysis for functional enrichment and network visualization.
Capabilities
- Protein-protein interaction queries
- Network clustering
- Functional enrichment analysis
- Cytoscape integration
- Network visualization
- Interaction confidence scoring
Usage Guidelines
- Query interactions with appropriate confidence thresholds
- Cluster networks to identify modules
- Perform functional enrichment on modules
- Visualize networks with meaningful layouts
- Export to Cytoscape for advanced visualization
- Document confidence thresholds and filters
Dependencies
- STRING-db
- Cytoscape
- NetworkX
Process Integration
- Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
- Multi-Omics Data Integration (multi-omics-integration)
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