ReddRadar
Topic: skills
17,247 skills in this topic.
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bio-sam-bam-basics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-metagenomics-strain-tracking
Track bacterial strains using MASH, sourmash, fastANI, and inStrain. Compare genomes, detect contamination, and monitor strain-level variation. Use when needing sub-species resolution for outbreak tracking, transmission analysis, or within-host strain dynamics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-de-results
Extract, filter, annotate, and export differential expression results from DESeq2 or edgeR. Use for identifying significant genes, applying multiple testing corrections, adding gene annotations, and preparing results for downstream analysis. Use when filtering and exporting DE analysis results.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-single-cell-data-io
Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating Seurat objects and AnnData objects, and converting between formats. Use when loading, saving, or converting single-cell data formats.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-population-genetics-selection-statistics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-seq-objects
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-sashimi-plots
Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot. Visualizes differential splicing events with grouped samples and junction read support. Use when visualizing specific splicing events or validating differential splicing results.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-restriction-sites
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-longread-qc
Quality control for long-read sequencing data using NanoPlot, NanoStat, and chopper. Generate QC reports, filter reads by length and quality, and visualize read characteristics. Use when assessing ONT or PacBio run quality or filtering reads before assembly or alignment.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-expression-matrix-sparse-handling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-long-read-sequencing-isoseq-analysis
Analyze PacBio Iso-Seq data for full-length isoform discovery and quantification. Use when characterizing transcript diversity or identifying novel splice variants.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-imaging-mass-cytometry-spatial-analysis
Spatial analysis of cell neighborhoods and interactions in IMC data. Covers neighbor graphs, spatial statistics, and interaction testing. Use when analyzing spatial relationships between cell types, testing for neighborhood enrichment, or identifying cell-cell interaction patterns in imaging mass cytometry data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-intervals-gtf-gff-handling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-imaging-mass-cytometry-cell-segmentation
Cell segmentation from multiplexed tissue images. Covers deep learning (Cellpose, Mesmer) and classical approaches for nuclear and whole-cell segmentation. Use when extracting single-cell data from IMC or MIBI images after preprocessing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-restriction-enzyme-selection
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-proteomics-differential-abundance
Statistical testing for differentially abundant proteins between conditions. Covers limma and MSstats workflows with multiple testing correction. Use when identifying proteins with significant abundance changes between experimental groups.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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arxiv-search
Search arXiv physics, math, and computer science preprints using natural language queries. Powered by Valyu semantic search.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-metabolomics-msdial-preprocessing
MS-DIAL-based metabolomics preprocessing as alternative to XCMS. Covers peak detection, alignment, annotation, and export for downstream analysis. Use when processing MS-DIAL output files for R/Python analysis or when preferring GUI-based preprocessing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-data-visualization-circos-plots
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clinical-databases-pharmacogenomics
Query PharmGKB and CPIC for drug-gene interactions, pharmacogenomic annotations, and dosing guidelines. Use when predicting drug response from genetic variants or implementing clinical pharmacogenomics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-entrez-link
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-liquid-biopsy-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-intervals-proximity-operations
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-ribo-seq-riboseq-preprocessing
Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment. Use when preparing Ribo-seq reads for downstream analysis of translation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009