Topic: skills
17,247 skills in this topic.
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bio-longread-medaka
Polish assemblies and call variants from Oxford Nanopore data using medaka. Uses neural networks trained on specific basecaller versions. Use when improving ONT-only assemblies or calling variants from Nanopore data without short-read polishing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-proteomics-quantification
Protein quantification from mass spectrometry data including label-free (LFQ, intensity-based), isobaric labeling (TMT, iTRAQ), and metabolic labeling (SILAC) approaches. Use when extracting protein abundances from MS data for differential analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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instrument-data-to-allotrope
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full ASM JSON, flattened CSV for easy import, and exportable Python code for data engineers. Common triggers include converting instrument files, standardizing lab data, preparing data for upload to LIMS/ELN systems, or generating parser code for production pipelines.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-metabolomics-pathway-mapping
Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpreting metabolomics results in the context of biochemical pathways.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-de-results
Extract, filter, annotate, and export differential expression results from DESeq2 or edgeR. Use for identifying significant genes, applying multiple testing corrections, adding gene annotations, and preparing results for downstream analysis. Use when filtering and exporting DE analysis results.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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organoid-drug-response-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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biologist-analyst
Analyzes living systems and biological phenomena through biological lens using evolution, molecular biology,
ecology, and systems biology frameworks.
Provides insights on mechanisms, adaptations, interactions, and life processes.
Use when: Biological systems, health issues, evolutionary questions, ecological problems, biotechnology.
Evaluates: Function, structure, heredity, evolution, interactions, molecular mechanisms.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-single-cell-scatac-analysis
Single-cell ATAC-seq analysis with Signac (R/Seurat) and ArchR. Process 10X Genomics scATAC data, perform QC, dimensionality reduction, clustering, peak calling, and motif activity scoring with chromVAR. Use when analyzing single-cell ATAC-seq data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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biokernel
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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test-driven-development
Use when implementing any feature or bugfix, before writing implementation code
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-intervals-gtf-gff-handling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-motif-search
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-crispr-screens-library-design
CRISPR library design for genetic screens. Covers sgRNA selection, library composition, control design, and oligo ordering. Use when designing custom sgRNA libraries for knockout, activation, or interference screens.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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vcf-annotator
Annotate VCF variants with VEP, ClinVar, gnomAD frequencies, and ancestry-aware context. Generates prioritised variant reports.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-single-cell-data-io
Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating Seurat objects and AnnData objects, and converting between formats. Use when loading, saving, or converting single-cell data formats.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-de-edger-basics
Perform differential expression analysis using edgeR in R/Bioconductor. Use for analyzing RNA-seq count data with the quasi-likelihood F-test framework, creating DGEList objects, normalization, dispersion estimation, and statistical testing. Use when performing DE analysis with edgeR.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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grief-companion
Compassionate bereavement support, memorial creation, grief education, and healing journey guidance. Specializes in understanding grief stages, creating meaningful tributes, and supporting the non-linear path of loss.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-duplicate-handling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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cbioportal-database
Query cBioPortal for cancer genomics data including somatic mutations, copy number alterations, gene expression, and survival data across hundreds of cancer studies. Essential for cancer target validation, oncogene/tumor suppressor analysis, and patient-level genomic profiling.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-spatial-transcriptomics-spatial-deconvolution
Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type proportions from scRNA-seq references. Use when estimating cell type composition in spatial spots.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-read-alignment-bwa-alignment
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-cnv-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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speech-pathology-ai
Expert speech-language pathologist specializing in AI-powered speech therapy, phoneme analysis, articulation visualization, voice disorders, fluency intervention, and assistive communication technology. Activate on 'speech therapy', 'articulation', 'phoneme analysis', 'voice disorder', 'fluency', 'stuttering', 'AAC', 'pronunciation', 'speech recognition', 'mellifluo.us'. NOT for general audio processing, music production, or voice acting coaching without clinical context.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-tcr-bcr-analysis-mixcr-analysis
Perform V(D)J alignment and clonotype assembly from TCR-seq or BCR-seq data using MiXCR. Use when processing raw immune repertoire sequencing data to identify clonotypes and their frequencies.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009