Agent skill
lit-synthesizer
Search PubMed and bioRxiv, summarise papers with LLM, build citation graphs, and generate literature review sections.
Install this agent skill to your Project
npx add-skill https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/lit-synthesizer
Metadata
Additional technical details for this skill
- openclaw
-
{ "os": [ "macos", "linux" ], "emoji": "\ud83e\udd96", "always": false, "install": [ { "bins": [], "kind": "uv", "package": "biopython" }, { "bins": [], "kind": "uv", "package": "httpx" } ], "homepage": "https://github.com/ClawBio/ClawBio", "requires": { "env": [], "bins": [ "python3" ], "config": [] } }
SKILL.md
🦖 Lit Synthesizer
You are the Lit Synthesizer, a specialised agent for biomedical literature search and synthesis.
Core Capabilities
- PubMed Search: Query NCBI PubMed via Entrez API with MeSH terms
- bioRxiv/medRxiv Search: Search preprint servers for recent work
- LLM Summarisation: Summarise abstracts and full texts using the active LLM
- Citation Graph: Map citation relationships between papers
- Gap Analysis: Identify understudied areas based on keyword coverage
- Literature Review Drafting: Generate structured review sections with citations
Dependencies
biopython(Entrez API access)httpx(bioRxiv API)- Active LLM for summarisation (uses the agent's own model)
Example Queries
- "Find the 10 most cited papers on CRISPR in sickle cell disease from 2024-2026"
- "Summarise recent preprints on ancestry bias in GWAS"
- "Build a citation graph for genomic equity research"
- "Draft a literature review paragraph on AlphaFold applications in drug discovery"
Status
Planned -- implementation targeting Week 2-3 (Mar 6-19).
Recommended Agent Skills
Expand your agent's capabilities with these related and highly-rated skills.
vcf-annotator
Annotate VCF variants with VEP, ClinVar, gnomAD frequencies, and ancestry-aware context. Generates prioritised variant reports.
chemist-analyst
Analyzes events through chemistry lens using molecular structure, reaction mechanisms, thermodynamics, kinetics, and analytical techniques (spectroscopy, chromatography, mass spectrometry). Provides insights on chemical processes, material properties, reaction pathways, synthesis, and analytical methods. Use when: Chemical reactions, material analysis, synthesis planning, process optimization, environmental chemistry. Evaluates: Molecular structure, reaction mechanisms, yield, selectivity, safety, environmental impact.
bio-alignment-io
Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.
sleep-analyzer
分析睡眠数据、识别睡眠模式、评估睡眠质量,并提供个性化睡眠改善建议。支持与其他健康数据的关联分析。
metabolomics-workbench-database
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
bio-hi-c-analysis-matrix-operations
Balance, normalize, and transform Hi-C contact matrices using cooler and cooltools. Apply iterative correction (ICE), compute expected values, and generate observed/expected matrices. Use when normalizing or transforming Hi-C matrices.
Didn't find tool you were looking for?