Topic: medical
897 skills in this topic.
-
bio-differential-expression-batch-correction
Remove batch effects from RNA-seq data using ComBat, ComBat-Seq, limma removeBatchEffect, and SVA for unknown batch variables. Use when correcting batch effects in expression data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
tpd-ternary-complex-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-genome-assembly-contamination-detection
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-reporting-jupyter-reports
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-immunoinformatics-epitope-prediction
Predict B-cell and T-cell epitopes using BepiPred, IEDB tools, and structure-based methods for vaccine and antibody design. Identify immunogenic regions in antigens. Use when designing vaccines, mapping antibody binding sites, or predicting immunogenic peptides.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-copy-number-cnvkit-analysis
Detect copy number variants from targeted/exome sequencing using CNVkit. Supports tumor-normal pairs, tumor-only, and germline CNV calling. Use when detecting CNVs from WES or targeted panel sequencing data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-clinical-databases-myvariant-queries
Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. Use when annotating variants with clinical and population data from multiple sources simultaneously.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-primer-design-primer-basics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
data-transform
Transform, clean, reshape, and preprocess data using pandas and numpy. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
fastq-analysis-pipeline
Guide through omicverse's alignment module for SRA downloading, FASTQ quality control, STAR alignment, gene quantification, and single-cell kallisto/bustools pipelines covering both bulk and single-cell RNA-seq workflows.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-expression-matrix-metadata-joins
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
biomaster-workflows
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-proteomics-spectral-libraries
Build, manage, and search spectral libraries for proteomics. Use when creating or working with spectral libraries for DIA analysis. Covers DDA-based library generation, predicted libraries (Prosit, DeepLC), and library formats.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-clip-seq-binding-site-annotation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
tooluniverse-drug-drug-interaction
Comprehensive drug-drug interaction (DDI) prediction and risk assessment. Analyzes interaction mechanisms (CYP450, transporters, pharmacodynamic), severity classification, clinical evidence grading, and provides management strategies. Supports single drug pairs, polypharmacy analysis (3+ drugs), and alternative drug recommendations. Use when users ask about drug interactions, medication safety, polypharmacy risks, or need DDI assessment for clinical decision support.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-epidemiological-genomics-pathogen-typing
Perform multi-locus sequence typing (MLST), core genome MLST, and SNP-based strain typing for bacterial isolate characterization using mlst and chewBBACA. Use when identifying strain types, tracking outbreak clones, or characterizing bacterial isolates.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
receiving-code-review
Use when receiving code review feedback, before implementing suggestions, especially if feedback seems unclear or technically questionable - requires technical rigor and verification, not performative agreement or blind implementation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
shap
Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box model.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
protocolsio-integration
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-basecalling
Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Guppy is deprecated; use Dorado for all new analyses.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-chipseq-super-enhancers
Identifies super-enhancers from H3K27ac ChIP-seq data using ROSE and related tools. Use when studying cell identity genes, cancer-associated regulatory elements, or master transcription factor binding regions that cluster into large enhancer domains.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
autonomous-oncology-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
-
bio-experimental-design-power-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009