Topic: medical
897 skills in this topic.
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biomaster-workflows
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-immunoinformatics-epitope-prediction
Predict B-cell and T-cell epitopes using BepiPred, IEDB tools, and structure-based methods for vaccine and antibody design. Identify immunogenic regions in antigens. Use when designing vaccines, mapping antibody binding sites, or predicting immunogenic peptides.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-copy-number-cnvkit-analysis
Detect copy number variants from targeted/exome sequencing using CNVkit. Supports tumor-normal pairs, tumor-only, and germline CNV calling. Use when detecting CNVs from WES or targeted panel sequencing data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-reporting-jupyter-reports
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clinical-databases-myvariant-queries
Query myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a single request. Use when annotating variants with clinical and population data from multiple sources simultaneously.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-drug-drug-interaction
Comprehensive drug-drug interaction (DDI) prediction and risk assessment. Analyzes interaction mechanisms (CYP450, transporters, pharmacodynamic), severity classification, clinical evidence grading, and provides management strategies. Supports single drug pairs, polypharmacy analysis (3+ drugs), and alternative drug recommendations. Use when users ask about drug interactions, medication safety, polypharmacy risks, or need DDI assessment for clinical decision support.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tpd-ternary-complex-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-primer-design-primer-basics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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data-transform
Transform, clean, reshape, and preprocess data using pandas and numpy. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-differential-expression-batch-correction
Remove batch effects from RNA-seq data using ComBat, ComBat-Seq, limma removeBatchEffect, and SVA for unknown batch variables. Use when correcting batch effects in expression data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-expression-matrix-metadata-joins
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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shap
Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (waterfall, beeswarm, bar, scatter, force, heatmap), debugging models, analyzing model bias or fairness, comparing models, or implementing explainable AI. Works with tree-based models (XGBoost, LightGBM, Random Forest), deep learning (TensorFlow, PyTorch), linear models, and any black-box model.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-proteomics-spectral-libraries
Build, manage, and search spectral libraries for proteomics. Use when creating or working with spectral libraries for DIA analysis. Covers DDA-based library generation, predicted libraries (Prosit, DeepLC), and library formats.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clip-seq-binding-site-annotation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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protocolsio-integration
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-epidemiological-genomics-pathogen-typing
Perform multi-locus sequence typing (MLST), core genome MLST, and SNP-based strain typing for bacterial isolate characterization using mlst and chewBBACA. Use when identifying strain types, tracking outbreak clones, or characterizing bacterial isolates.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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receiving-code-review
Use when receiving code review feedback, before implementing suggestions, especially if feedback seems unclear or technically questionable - requires technical rigor and verification, not performative agreement or blind implementation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-assembly-contamination-detection
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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fastq-analysis-pipeline
Guide through omicverse's alignment module for SRA downloading, FASTQ quality control, STAR alignment, gene quantification, and single-cell kallisto/bustools pipelines covering both bulk and single-cell RNA-seq workflows.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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gwas-database
Query NHGRI-EBI GWAS Catalog for SNP-trait associations. Search variants by rs ID, disease/trait, gene, retrieve p-values and summary statistics, for genetic epidemiology and polygenic risk scores.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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interpro-database
Query InterPro for protein family, domain, and functional site annotations. Integrates Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, and 11 other member databases. Use for protein function prediction, domain architecture analysis, evolutionary classification, and GO term mapping.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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medical-imaging-review
Write comprehensive literature reviews for medical imaging AI research. Use when writing survey papers, systematic reviews, or literature analyses on topics like segmentation, detection, classification in CT, MRI, X-ray, ultrasound, or pathology imaging. Triggers on requests for "review paper", "survey", "literature review", "综述", "systematic review", or mentions of writing academic reviews on deep learning for medical imaging.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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molecular-dynamics
Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces). For structural biology, drug binding, and biophysics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009