Topic: skills
17,247 skills in this topic.
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plotly
Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboards, exploratory analysis, and presentations. For static publication figures use matplotlib or scientific-visualization.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tiledbvcf
Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-phylogenetics
Production-ready phylogenetics and sequence analysis skill for alignment processing, tree analysis, and evolutionary metrics. Computes treeness, RCV, treeness/RCV, parsimony informative sites, evolutionary rate, DVMC, tree length, alignment gap statistics, GC content, and bootstrap support using PhyKIT, Biopython, and DendroPy. Performs NJ/UPGMA/parsimony tree construction, Robinson-Foulds distance, Mann-Whitney U tests, and batch analysis across gene families. Integrates with ToolUniverse for sequence retrieval (NCBI, UniProt, Ensembl) and tree annotation. Use when processing FASTA/PHYLIP/Nexus/Newick files, computing phylogenetic metrics, comparing taxa groups, or answering questions about alignments, trees, parsimony, or molecular evolution.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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protein-interaction-network-analysis
Analyze protein-protein interaction networks using STRING, BioGRID, and SASBDB databases. Maps protein identifiers, retrieves interaction networks with confidence scores, performs functional enrichment analysis (GO/KEGG/Reactome), and optionally includes structural data. No API key required for core functionality (STRING). Use when analyzing protein networks, discovering interaction partners, identifying functional modules, or studying protein complexes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-systems-biology-flux-balance-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-imc-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-metabolomics-normalization-qc
Quality control and normalization for metabolomics data. Covers QC-based correction, batch effect removal, and data transformation methods. Use when correcting technical variation in metabolomics data before statistical analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pdb-database
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-precision-oncology
Provide actionable treatment recommendations for cancer patients based on molecular profile. Interprets tumor mutations, identifies FDA-approved therapies, finds resistance mechanisms, matches clinical trials. Use when oncologist asks about treatment options for specific mutations (EGFR, KRAS, BRAF, etc.), therapy resistance, or clinical trial eligibility.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-longread-alignment
Align long reads using minimap2 for Oxford Nanopore and PacBio data. Supports various presets for different read types and applications. Use when aligning ONT or PacBio reads to a reference genome for variant calling, SV detection, or coverage analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bulk-rna-seq-differential-expression-with-omicverse
Guide Claude through omicverse's bulk RNA-seq DEG pipeline, from gene ID mapping and DESeq2 normalization to statistical testing, visualization, and pathway enrichment. Use when a user has bulk count matrices and needs differential expression analysis in omicverse.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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alphafold-database
Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-hi-c-analysis-loop-calling
Detect chromatin loops and point interactions from Hi-C data using cooltools, chromosight, and HiCCUPS-like methods. Identify CTCF-mediated loops and enhancer-promoter contacts. Use when detecting chromatin loops from Hi-C data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-variant-calling
Call SNPs and indels from aligned reads using bcftools mpileup and call. Use when detecting variants from BAM files or generating VCF from alignments.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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epidemiologist-analyst
Analyzes disease patterns and health events through epidemiological lens using surveillance systems,
outbreak investigation methods, and disease modeling frameworks.
Provides insights on disease spread, risk factors, prevention strategies, and public health interventions.
Use when: Disease outbreaks, health policy evaluation, risk assessment, intervention planning.
Evaluates: Transmission dynamics, risk factors, causality, population health impact, intervention effectiveness.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pdf-processing-pro
Production-ready PDF processing with forms, tables, OCR, validation, and batch operations. Use when working with complex PDF workflows in production environments, processing large volumes of PDFs, or requiring robust error handling and validation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-proteomics-analysis
Analyze mass spectrometry proteomics data including protein quantification, differential expression, post-translational modifications (PTMs), and protein-protein interactions. Processes MaxQuant, Spectronaut, DIA-NN, and other MS platform outputs. Performs normalization, statistical analysis, pathway enrichment, and integration with transcriptomics. Use when analyzing proteomics data, comparing protein abundance between conditions, identifying PTM changes, studying protein complexes, integrating protein and RNA data, discovering protein biomarkers, or conducting quantitative proteomics experiments.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-reporting-quarto-reports
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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mental-health-analyzer
分析心理健康数据、识别心理模式、评估心理健康状况、提供个性化心理健康建议。支持与睡眠、运动、营养等其他健康数据的关联分析。
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-population-genetics-scikit-allel-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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scikit-bio
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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open-targets-search
Search Open Targets drug-disease associations with natural language queries. Target validation powered by Valyu semantic search.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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requesting-code-review
Use when completing tasks, implementing major features, or before merging to verify work meets requirements
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-restriction-fragment-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009