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Topic: openclaw

3,425 skills in this topic.

flowio Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
deeptools NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-experimental-design-power-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
interpro-database Query InterPro for protein family, domain, and functional site annotations. Integrates Pfam, PANTHER, PRINTS, SMART, SUPERFAMILY, and 11 other member databases. Use for protein function prediction, domain architecture analysis, evolutionary classification, and GO term mapping.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-chipseq-super-enhancers Identifies super-enhancers from H3K27ac ChIP-seq data using ROSE and related tools. Use when studying cell identity genes, cancer-associated regulatory elements, or master transcription factor binding regions that cluster into large enhancer domains.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-alignment-pairwise Perform pairwise sequence alignment using Biopython Bio.Align.PairwiseAligner. Use when comparing two sequences, finding optimal alignments, scoring similarity, and identifying local or global matches between DNA, RNA, or protein sequences.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
clinical-trials-search Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-local-blast
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-reaction-enumeration Enumerates chemical libraries through reaction SMARTS transformations using RDKit. Generates virtual compound libraries from building blocks using defined chemical reactions with product validation. Use when creating combinatorial libraries or enumerating products from synthetic routes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-variant-calling-filtering-best-practices Comprehensive variant filtering including GATK VQSR, hard filters, bcftools expressions, and quality metric interpretation for SNPs and indels. Use when filtering variants using GATK best practices.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
latchbio-integration Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
molecular-dynamics Run and analyze molecular dynamics simulations with OpenMM and MDAnalysis. Set up protein/small molecule systems, define force fields, run energy minimization and production MD, analyze trajectories (RMSD, RMSF, contact maps, free energy surfaces). For structural biology, drug binding, and biophysics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-workflows-microbiome-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-hi-c-analysis-contact-pairs Process Hi-C read pairs using pairtools. Parse alignments, filter duplicates, classify pairs, and generate contact statistics from Hi-C sequencing data. Use when processing raw Hi-C read pairs.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-microbiome-taxonomy-assignment Taxonomic classification of ASVs using reference databases like SILVA, GTDB, or UNITE. Covers naive Bayes classifiers (DADA2, IDTAXA) and exact matching approaches. Use when assigning taxonomy to ASVs after DADA2 amplicon processing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-small-rna-seq-differential-mirna
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-pdb-structure-modification Modify protein structures using Biopython Bio.PDB. Use when transforming coordinates, removing atoms or residues, adding new entities, modifying B-factors and occupancies, or building structures programmatically.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-vcf-basics View, query, and understand VCF/BCF variant files using bcftools and cyvcf2. Use when inspecting variants, extracting specific fields, or understanding VCF format structure.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
hmdb-database Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-genome-engineering-hdr-template-design Design homology-directed repair donor templates for CRISPR knock-ins using primer3-py. Create ssODN, dsDNA, or plasmid templates with optimized homology arms. Use when designing donor templates for precise insertions, tagging, or allele replacement.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-multi-omics-data-harmonization Preprocessing and harmonization of multi-omics data before integration. Covers normalization, batch correction, feature alignment, and missing value handling across data types. Use when preparing multi-omics datasets for integration analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
nk-cell-therapy-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-clinical-databases-dbsnp-queries Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or retrieving basic variant information.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-expression-matrix-counts-ingest
FreedomIntelligence/OpenClaw-Medical-Skills 2,009