Topic: skills
17,247 skills in this topic.
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bio-metagenomics-functional-profiling
Profile functional potential of metagenomes using HUMAnN3 and similar tools. Use when obtaining pathway abundances, gene family counts, or functional annotations from metagenomic data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-immunoinformatics-neoantigen-prediction
Identify tumor neoantigens from somatic mutations using pVACtools for personalized cancer immunotherapy. Predict mutant peptides that bind patient HLA and may elicit T-cell responses. Use when identifying vaccine targets or checkpoint inhibitor response biomarkers from tumor sequencing data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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clinical-nlp-extractor
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-longitudinal-monitoring
Tracks ctDNA dynamics over time for treatment response monitoring using serial liquid biopsy samples. Analyzes tumor fraction trends, mutation clearance kinetics, and defines molecular response criteria. Use when monitoring patients during therapy or detecting molecular relapse before clinical progression.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-tcr-bcr-analysis-immcantation-analysis
Analyze BCR repertoires for somatic hypermutation, clonal lineages, and B cell phylogenetics using the Immcantation framework. Use when studying B cell affinity maturation, germinal center dynamics, or antibody evolution.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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spatial-visualization
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-assembly-long-read-assembly
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-geo-data
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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openalex-database
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly works. Use for literature searches, research output analysis, citation analysis, and academic database queries.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bioservices
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-comparative-genomics-hgt-detection
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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nicheformer-spatial-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-multi-omics-mixomics-analysis
Supervised and unsupervised multi-omics integration with mixOmics. Includes sPLS for pairwise integration and DIABLO for multi-block discriminant analysis. Use when performing supervised multi-omics integration or identifying features that discriminate between groups.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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spatial-statistics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clinical-databases-polygenic-risk
Calculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. Use when predicting disease risk from genome-wide genetic variants.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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spatial-deconvolution
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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hypothesis-generation
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-causal-genomics-colocalization-analysis
Test whether two traits share a causal variant at a genomic locus using Bayesian colocalization with coloc. Computes posterior probabilities for shared vs distinct causal variants between GWAS and eQTL signals. Use when determining if a GWAS signal and an eQTL share the same causal variant.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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string-protein-interaction-analysis-with-omicverse
Help Claude query STRING for protein interactions, build PPI graphs with pyPPI, and render styled network figures for bulk gene lists.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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spatial-domains
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-variant-calling-joint-calling
Joint genotype calling across multiple samples using GATK CombineGVCFs and GenotypeGVCFs. Essential for cohort studies, population genetics, and leveraging VQSR. Use when performing joint genotyping across multiple samples.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-intervals-coverage-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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markitdown
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-metabolic-modeling-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009