Topic: openclaw
3,425 skills in this topic.
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vcf-manipulation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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verification-before-completion
Use when about to claim work is complete, fixed, or passing, before committing or creating PRs - requires running verification commands and confirming output before making any success claims; evidence before assertions always
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-proteomics-data-import
Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt. Use when starting a proteomics analysis with raw or processed MS data. Handles contaminant filtering and missing value assessment.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-data-visualization-multipanel-figures
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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structural-variant-calling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-reporting-rmarkdown-reports
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-sequence-properties
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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vcf-basics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pydeseq2
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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variant-interpretation-acmg
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-riboseq-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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writing-plans
Use when you have a spec or requirements for a multi-step task, before touching code
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-pathway-wikipathways
WikiPathways enrichment using clusterProfiler and rWikiPathways. Use when analyzing gene lists against community-curated open-source pathways. Performs over-representation analysis and GSEA for 30+ species.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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literature-review
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bioinformatics-singlecell
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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compbioagent-explorer
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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depmap
Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validating oncology drug targets.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pyopenms
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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vaex
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine learning on large datasets. Apply when users need to work with large CSV/HDF5/Arrow/Parquet files, perform fast statistics on massive datasets, create visualizations of big data, or build ML pipelines that do not fit in memory.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-phasing-imputation-reference-panels
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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chemical-property-lookup
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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executing-plans
Use when you have a written implementation plan to execute in a separate session with review checkpoints
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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lamindb
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-variant-calling-clinical-interpretation
Clinical variant interpretation using ClinVar, ACMG guidelines, and pathogenicity predictors. Prioritize variants for diagnostic and research applications. Use when interpreting clinical significance of variants.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009