Topic: openclaw
3,425 skills in this topic.
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chemical-property-lookup
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-rnaseq-deseq2
Production-ready RNA-seq differential expression analysis using PyDESeq2. Performs DESeq2 normalization, dispersion estimation, Wald testing, LFC shrinkage, and result filtering. Handles multi-factor designs, multiple contrasts, batch effects, and integrates with gene enrichment (gseapy) and ToolUniverse annotation tools (UniProt, Ensembl, OpenTargets). Supports CSV/TSV/H5AD input formats and any organism. Use when analyzing RNA-seq count matrices, identifying DEGs, performing differential expression with statistical rigor, or answering questions about gene expression changes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-single-cell-lineage-tracing
Reconstruct cell lineage trees from CRISPR barcode tracing or mitochondrial mutations. Use when studying clonal dynamics, cell fate decisions, or developmental trajectories.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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immune-checkpoint-combination-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-blast-searches
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflow-management-cwl-workflows
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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systematic-debugging
Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-orchestrator
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-single-cell-trajectory-inference
Infer developmental trajectories and pseudotime from single-cell RNA-seq data using Monocle3, Slingshot, and scVelo for RNA velocity analysis. Use when inferring developmental trajectories or pseudotime.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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geo-database
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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lobster-bioinformatics
Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization. Use when analyzing genomics data, searching for papers/datasets, or working with H5AD, CSV, GEO/SRA accessions, or biological data. Requires lobster-ai package installed.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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ctdna-dynamics-mrd-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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scientific-manuscript
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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writing-plans
Use when you have a spec or requirements for a multi-step task, before touching code
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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subagent-driven-development
Use when executing implementation plans with independent tasks in the current session
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-target-research
Gather comprehensive biological target intelligence from 9 parallel research paths covering protein info, structure, interactions, pathways, expression, variants, drug interactions, and literature. Features collision-aware searches, evidence grading (T1-T4), explicit Open Targets coverage, and mandatory completeness auditing. Use when users ask about drug targets, proteins, genes, or need target validation, druggability assessment, or comprehensive target profiling.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-atac-seq-footprinting
Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. Use when identifying TF occupancy patterns within accessible regions, as TF binding protects DNA from Tn5 cutting.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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myeloma-mrd-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bulk-rna-seq-batch-correction-with-combat
Use omicverse's pyComBat wrapper to remove batch effects from merged bulk RNA-seq or microarray cohorts, export corrected matrices, and benchmark pre/post correction visualisations.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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depmap
Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validating oncology drug targets.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-systems-biology-gene-essentiality
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-comparative-genomics-ortholog-inference
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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compbioagent-explorer
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-pathway-wikipathways
WikiPathways enrichment using clusterProfiler and rWikiPathways. Use when analyzing gene lists against community-curated open-source pathways. Performs over-representation analysis and GSEA for 30+ species.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009