Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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regulatory-drafter
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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latex-posters
Create professional research posters in LaTeX using beamerposter, tikzposter, or baposter. Support for conference presentations, academic posters, and scientific communication. Includes layout design, color schemes, multi-column formats, figure integration, and poster-specific best practices for visual communication.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clinical-databases-dbsnp-queries
Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or retrieving basic variant information.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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single-cell-clustering-and-batch-correction-with-omicverse
Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in t_cluster.ipynb and t_single_batch.ipynb.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-differential-splicing
Detects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). Reports events with FDR-corrected significance and delta PSI effect sizes. Use when comparing splicing patterns between treatment groups, tissues, or disease states.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-pdb-geometric-analysis
Perform geometric calculations on protein structures using Biopython Bio.PDB. Use when measuring distances, angles, and dihedrals, superimposing structures, calculating RMSD, or computing solvent accessible surface area (SASA).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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autonomous-oncology-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-reverse-complement
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-vcf-statistics
Generate variant statistics, sample concordance, and quality metrics using bcftools stats and gtcheck. Use when evaluating variant quality, comparing samples, or summarizing VCF contents.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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mrd-edge-detection-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-immunotherapy-response-prediction
Predict patient response to immune checkpoint inhibitors (ICIs) using multi-biomarker integration. Given a cancer type, somatic mutations, and optional biomarkers (TMB, PD-L1, MSI status), performs systematic analysis across 11 phases covering TMB classification, neoantigen burden estimation, MSI/MMR assessment, PD-L1 evaluation, immune microenvironment profiling, mutation-based resistance/sensitivity prediction, clinical evidence retrieval, and multi-biomarker score integration. Generates a quantitative ICI Response Score (0-100), response likelihood tier, specific ICI drug recommendations with evidence, resistance risk factors, and a monitoring plan. Use when oncologists ask about immunotherapy eligibility, checkpoint inhibitor selection, or biomarker-guided ICI treatment decisions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pymc-bayesian-modeling
Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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genome-compare
Compare your genome to George Church (PGP-1) and estimate ancestry composition via IBS and EM admixture
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-single-cell-metabolite-communication
Analyze metabolite-mediated cell-cell communication using MeboCost for metabolic signaling inference between cell types. Predict metabolite secretion and sensing patterns from scRNA-seq data. Use when studying metabolic crosstalk between cell populations or metabolite-receptor interactions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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spatial-transcriptomics-tutorials-with-omicverse
Guide users through omicverse's spatial transcriptomics tutorials covering preprocessing, deconvolution, and downstream modelling workflows across Visium, Visium HD, Stereo-seq, and Slide-seq datasets.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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datamol
Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery: SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-small-rna-seq-differential-mirna
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-machine-learning-prediction-explanation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tumor-mutational-burden-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-imaging-mass-cytometry-data-preprocessing
Load and preprocess imaging mass cytometry (IMC) and MIBI data. Covers MCD/TIFF handling, hot pixel removal, and image normalization. Use when starting IMC analysis from raw MCD files or preparing images for segmentation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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ontology-mapper
Map materials science terms, crystal structures, and sample descriptions to ontology classes and properties. Supports any ontology registered in ontology_registry.json. Use when translating natural-language material descriptions to ontology terms, annotating simulation inputs with ontology metadata, or mapping crystal parameters (space group, Bravais lattice, lattice constants) to standardized ontology representations.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-copy-number-gatk-cnv
Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Use when following GATK best practices or integrating CNV calling with other GATK variant pipelines.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-primer-design-qpcr-primers
FreedomIntelligence/OpenClaw-Medical-Skills 2,009