Topic: skills
17,247 skills in this topic.
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bio-workflows-scrnaseq-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-pdb-structure-io
Parse and write protein structure files using Biopython Bio.PDB. Use when reading PDB, mmCIF, and MMTF files, downloading structures from RCSB PDB, or writing structures to various formats.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-de-deseq2-basics
Perform differential expression analysis using DESeq2 in R/Bioconductor. Use for analyzing RNA-seq count data, creating DESeqDataSet objects, running the DESeq workflow, and extracting results with log fold change shrinkage. Use when performing DE analysis with DESeq2.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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open-notebook
Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports 16+ AI providers including OpenAI, Anthropic, Google, Ollama, Groq, and Mistral with complete data privacy through self-hosting.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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geo-database
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-microbiome-differential-abundance
Differential abundance testing for microbiome data using compositionally-aware methods like ALDEx2, ANCOM-BC2, and MaAsLin2. Use when identifying taxa that differ between experimental groups while accounting for the compositional nature of microbiome data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-entrez-fetch
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-experimental-design-multiple-testing
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-fastq-quality
Work with FASTQ quality scores using Biopython. Use when analyzing read quality, filtering by quality, trimming low-quality bases, or generating quality reports.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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aav-vector-design-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-data-visualization-genome-browser-tracks
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pptx-posters
Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-rna-quantification-count-matrix-qc
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-single-cell-trajectory-inference
Infer developmental trajectories and pseudotime from single-cell RNA-seq data using Monocle3, Slingshot, and scVelo for RNA velocity analysis. Use when inferring developmental trajectories or pseudotime.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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mpn-progression-monitor-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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single-cell-downstream-analysis
Checklist-style reference for OmicVerse downstream tutorials covering AUCell scoring, metacell DEG, and related exports.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-variant-calling-clinical-interpretation
Clinical variant interpretation using ClinVar, ACMG guidelines, and pathogenicity predictors. Prioritize variants for diagnostic and research applications. Use when interpreting clinical significance of variants.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-flow-cytometry-clustering-phenotyping
Unsupervised clustering and cell type identification for flow/mass cytometry. Covers FlowSOM, Phenograph, and CATALYST workflows. Use when discovering cell populations in high-dimensional cytometry data without predefined gates.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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scientific-manuscript
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflow-management-cwl-workflows
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-phylo-distance-calculations
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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gwas-prs
Calculate polygenic risk scores from DTC genetic data using the PGS Catalog
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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immune-checkpoint-combination-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009