Topic: skills
17,247 skills in this topic.
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bio-data-visualization-color-palettes
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-read-qc-quality-filtering
Filter reads by quality scores, length, and N content using Trimmomatic and fastp. Apply sliding window trimming, remove low-quality bases from read ends, and discard reads below thresholds. Use when reads have poor quality tails or require minimum quality for downstream analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-basecalling
Convert raw Nanopore signal data (FAST5/POD5) to nucleotide sequences using Dorado basecaller. Covers model selection, GPU acceleration, modified base detection, and quality filtering. Use when processing raw Nanopore data before alignment. Guppy is deprecated; use Dorado for all new analyses.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-vcf-basics
View, query, and understand VCF/BCF variant files using bcftools and cyvcf2. Use when inspecting variants, extracting specific fields, or understanding VCF format structure.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-somatic-variant-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflow-management-wdl-workflows
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-metabolomics-xcms-preprocessing
XCMS3 workflow for LC-MS/MS metabolomics preprocessing. Covers peak detection, retention time alignment, correspondence (grouping), and gap filling. Use when processing raw LC-MS data into a feature table for untargeted metabolomics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-microbiome-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-assembly-hifi-assembly
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-merip-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-phylo-tree-visualization
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-machine-learning-model-validation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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agent-browser
Browse the web for any task — research topics, read articles, interact with web apps, fill forms, take screenshots, extract data, and test web pages. Use whenever a browser would be useful, not just when the user explicitly asks.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-rnaseq-to-de
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-small-rna-seq-differential-mirna
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clinical-databases-somatic-signatures
Extract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic processes. Use when identifying DNA damage mechanisms or etiology in cancer genomes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-systems-biology-context-specific-models
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-proteomics-protein-inference
Protein grouping and inference from peptide identifications. Use when resolving protein ambiguity from shared peptides. Handles protein groups and protein-level FDR control using parsimony and probabilistic approaches.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-copy-number-gatk-cnv
Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Use when following GATK best practices or integrating CNV calling with other GATK variant pipelines.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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autonomous-oncology-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-phasing-imputation-imputation-qc
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-crispr-editing-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-alignment-validation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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adhd-daily-planner
Time-blind friendly planning, executive function support, and daily structure for ADHD brains. Specializes in realistic time estimation, dopamine-aware task design, and building systems that actually work for neurodivergent minds.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009