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Topic: openclaw

3,425 skills in this topic.

bio-tcr-bcr-analysis-vdjtools-analysis Calculate immune repertoire diversity metrics, compare samples, and track clonal dynamics using VDJtools. Use when analyzing repertoire diversity, finding shared clonotypes, or comparing immune profiles between conditions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-variant-calling-deepvariant Deep learning-based variant calling with Google DeepVariant. Provides high accuracy for germline SNPs and indels from Illumina, PacBio, and ONT data. Use when calling variants with DeepVariant deep learning caller.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-variant-normalization Normalize indel representation and split multiallelic variants using bcftools norm. Use when comparing variants from different callers or preparing VCF for downstream analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-single-cell-scatac-analysis Single-cell ATAC-seq analysis with Signac (R/Seurat) and ArchR. Process 10X Genomics scATAC data, perform QC, dimensionality reduction, clustering, peak calling, and motif activity scoring with chromVAR. Use when analyzing single-cell ATAC-seq data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-small-rna-seq-mirge3-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-write-sequences Write biological sequences to files (FASTA, FASTQ, GenBank, EMBL) using Biopython Bio.SeqIO. Use when saving sequences, creating new sequence files, or outputting modified records.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
biokernel
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
biologist-analyst Analyzes living systems and biological phenomena through biological lens using evolution, molecular biology, ecology, and systems biology frameworks. Provides insights on mechanisms, adaptations, interactions, and life processes. Use when: Biological systems, health issues, evolutionary questions, ecological problems, biotechnology. Evaluates: Function, structure, heredity, evolution, interactions, molecular mechanisms.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
biomcp-server
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-spatial-transcriptomics-spatial-communication Analyze cell-cell communication in spatial transcriptomics data using ligand-receptor analysis with Squidpy. Infer intercellular signaling, identify communication pathways, and visualize interaction networks. Use when analyzing cell-cell communication in spatial context.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-spatial-transcriptomics-spatial-deconvolution Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type proportions from scRNA-seq references. Use when estimating cell type composition in spatial spots.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-single-cell-data-io Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating Seurat objects and AnnData objects, and converting between formats. Use when loading, saving, or converting single-cell data formats.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-proteomics-proteomics-qc Quality control and assessment for proteomics data. Use when evaluating proteomics data quality before downstream analysis. Covers sample metrics, missing value patterns, replicate correlation, batch effects, and intensity distributions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-proteomics-quantification Protein quantification from mass spectrometry data including label-free (LFQ, intensity-based), isobaric labeling (TMT, iTRAQ), and metabolic labeling (SILAC) approaches. Use when extracting protein abundances from MS data for differential analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-read-alignment-bwa-alignment
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-reporting-automated-qc-reports
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-restriction-enzyme-selection
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-restriction-sites
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-ribo-seq-riboseq-preprocessing Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment. Use when preparing Ribo-seq reads for downstream analysis of translation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
biomni-research-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-workflows-cnv-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-workflows-gwas-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
brainstorming You MUST use this before any creative work - creating features, building components, adding functionality, or modifying behavior. Explores user intent, requirements and design before implementation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
doc-coauthoring Guide users through a structured workflow for co-authoring documentation. Use when user wants to write documentation, proposals, technical specs, decision docs, or similar structured content. This workflow helps users efficiently transfer context, refine content through iteration, and verify the doc works for readers. Trigger when user mentions writing docs, creating proposals, drafting specs, or similar documentation tasks.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009