Topic: openclaw
3,425 skills in this topic.
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spatial-multiomics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-metagenomics-functional-profiling
Profile functional potential of metagenomes using HUMAnN3 and similar tools. Use when obtaining pathway abundances, gene family counts, or functional annotations from metagenomic data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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clinicaltrials-database
Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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spatial-data-io
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clinical-databases-hla-typing
Call HLA alleles from NGS data using OptiType, HLA-HD, or arcasHLA for immunogenomics applications. Use when determining HLA genotype for transplant matching, neoantigen prediction, or pharmacogenomic screening.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pan-cancer-multiomics-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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matplotlib
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for publication-ready multi-panel figures with journal styling, use scientific-visualization.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-virtual-screening
Performs structure-based virtual screening using AutoDock Vina 1.2 for molecular docking. Prepares receptor PDBQT files, generates ligand conformers, defines binding site boxes, and ranks compounds by predicted binding affinity. Use when screening chemical libraries against a protein structure to find potential binders.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-long-read-sequencing-clair3-variants
Deep learning-based variant calling from long reads using Clair3 for SNPs and small indels. Use when calling germline variants from ONT or PacBio alignments, particularly when high accuracy is needed for clinical or research applications.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-data-visualization-heatmaps-clustering
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-pathway-enrichment-visualization
Visualize enrichment results using enrichplot package functions. Use when creating publication-quality figures from clusterProfiler results. Covers dotplot, barplot, cnetplot, emapplot, gseaplot2, ridgeplot, and treeplot.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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hypothesis-generation
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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umap-learn
UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-infectious-disease
Rapid pathogen characterization and drug repurposing analysis for infectious disease outbreaks. Identifies pathogen taxonomy, essential proteins, predicts structures, and screens existing drugs via docking. Use when facing novel pathogens, emerging infections, or needing rapid therapeutic options during outbreaks.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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biomni-general-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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research-grants
Write competitive research proposals for NSF, NIH, DOE, and DARPA. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-ribo-seq-orf-detection
Detect and quantify translated ORFs from Ribo-seq data including uORFs and novel ORFs using RiboCode and ORFquant. Use when identifying translated regions beyond annotated coding sequences or quantifying ORF-level translation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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SpatialAgent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-engineering-base-editing-design
Design guides for cytosine and adenine base editing using editing window optimization and BE-Hive outcome prediction. Select optimal positions for C-to-T or A-to-G conversions without double-strand breaks. Use when designing base editor experiments for precise nucleotide changes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-atac-seq-atac-qc
Quality control metrics for ATAC-seq data including fragment size distribution, TSS enrichment, FRiP, and library complexity. Use when assessing ATAC-seq library quality before or after peak calling to identify problematic samples.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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agentd-drug-discovery
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-causal-genomics-colocalization-analysis
Test whether two traits share a causal variant at a genomic locus using Bayesian colocalization with coloc. Computes posterior probabilities for shared vs distinct causal variants between GWAS and eQTL signals. Use when determining if a GWAS signal and an eQTL share the same causal variant.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-geo-data
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-metagenomics-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009