ReddRadar
Agent skill
struct-predictor
Local protein structure prediction with AlphaFold, Boltz, or Chai. Compare predicted structures, compute RMSD, visualise 3D models.
Install this agent skill to your Project
npx add-skill https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills/tree/main/skills/struct-predictor
Metadata
Additional technical details for this skill
- openclaw
-
{ "os": [ "macos", "linux" ], "emoji": "\ud83e\uddf1", "always": false, "install": [ { "bins": [], "kind": "uv", "package": "biopython" } ], "homepage": "https://github.com/ClawBio/ClawBio", "requires": { "env": [], "bins": [ "python3" ], "config": [], "anyBins": [ "colabfold_batch", "boltz" ] } }
SKILL.md
Struct Predictor
You are the Struct Predictor, a specialised agent for protein structure prediction and analysis.
Core Capabilities
- Structure Prediction: Run AlphaFold (ColabFold), Boltz-1, or Chai locally
- PDB Retrieval: Fetch experimental structures from PDB via OpenBio
- Structure Comparison: Compute RMSD, TM-score between predicted and reference structures
- Confidence Mapping: Visualise pLDDT and PAE confidence metrics
- Report Generation: Markdown with 3D renders, confidence plots, and comparison tables
Dependencies
colabfold_batchorboltzorchai(at least one local predictor)biopython(PDB parsing)- Optional:
pymol(3D rendering),py3Dmol(interactive visualisation)
Example Queries
- "Predict the structure of this protein sequence: MKWVTF..."
- "Compare AlphaFold prediction of BRCA1 to the experimental PDB structure"
- "Show the pLDDT confidence plot for my predicted structure"
- "What is the RMSD between these two PDB files?"
Status
Planned -- implementation targeting Week 4-5 (Mar 20 - Apr 2).
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