Topic: gemini-cli
5,463 skills in this topic.
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cellxgene-census
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.
x-cmd/skill 19
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stat
Display detailed file or file system status with support for structured data exports (JSON, CSV). Core Scenario: When the user needs precise metadata about files or file systems for diagnostics or automation.
x-cmd/skill 19
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zarr-python
Chunked N-D arrays for cloud storage. Compressed arrays, parallel I/O, S3/GCS integration, NumPy/Dask/Xarray compatible, for large-scale scientific computing pipelines.
x-cmd/skill 19
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qiskit
IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production workloads, or needing IBM optimization tools. Best for IBM hardware execution, quantum error mitigation, and enterprise quantum computing. For Google hardware use cirq; for gradient-based quantum ML use pennylane; for open quantum system simulations use qutip.
x-cmd/skill 19
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modal
Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running batch processing jobs, scheduling compute-intensive tasks, or serving APIs that require GPU acceleration or dynamic scaling.
x-cmd/skill 19
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winget
Enhanced interface for Microsoft's WinGet package manager, supporting mirrors and proxy configuration. Core Scenario: When the user needs to manage Windows applications using the official native package manager.
x-cmd/skill 19
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ls
Enhanced ls command providing unified access to system resources like CPU, memory, and processes. Core Scenario: When the user needs a quick summary of files and system resource states via enhanced subcommands.
x-cmd/skill 19
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brenda-database
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
x-cmd/skill 19
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bioservices
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
x-cmd/skill 19
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flowio
Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
x-cmd/skill 19
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ensembl-database
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
x-cmd/skill 19
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fda-database
Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.
x-cmd/skill 19
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pytdc
Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.
x-cmd/skill 19
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etetoolkit
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
x-cmd/skill 19
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medchem
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
x-cmd/skill 19
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dingtalk
Send messages to DingTalk groups using bot webhooks, supporting Markdown and interactive cards. Core Scenario: When the user needs to automate notifications or send interactive messages to a DingTalk group.
x-cmd/skill 19
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matplotlib
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for publication-ready multi-panel figures with journal styling, use scientific-visualization.
x-cmd/skill 19
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uptime
Display system uptime and load averages in structured YAML format. Core Scenario: When the user needs to check system busy state (load) or total runtime in a script-friendly format.
x-cmd/skill 19
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statistical-analysis
Guided statistical analysis with test selection and reporting. Use when you need help choosing appropriate tests for your data, assumption checking, power analysis, and APA-formatted results. Best for academic research reporting, test selection guidance. For implementing specific models programmatically use statsmodels.
x-cmd/skill 19
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deno
Enhanced Deno module for running modern JavaScript and TypeScript with zero setup. Core Scenario: When the user needs to execute TypeScript scripts or manage Deno-based applications.
x-cmd/skill 19
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stable-baselines3
Production-ready reinforcement learning algorithms (PPO, SAC, DQN, TD3, DDPG, A2C) with scikit-learn-like API. Use for standard RL experiments, quick prototyping, and well-documented algorithm implementations. Best for single-agent RL with Gymnasium environments. For high-performance parallel training, multi-agent systems, or custom vectorized environments, use pufferlib instead.
x-cmd/skill 19
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pymoo
Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.
x-cmd/skill 19
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biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
x-cmd/skill 19
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grok
Integrate xAI Grok for intelligent chat and real-time information processing. Core Scenario: When the user wants to use Grok models for advanced reasoning or real-time query answers via CLI.
x-cmd/skill 19