Topic: gemini-cli
5,463 skills in this topic.
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biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
x-cmd/skill 19
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ll
Search and list information about files, archives, and operating system resources using fzf. Core Scenario: When the user needs an interactive way to explore file metadata or system resource summaries.
x-cmd/skill 19
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rowan
Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2). Use when tasks involve quantum chemistry calculations, molecular property prediction, DFT or semiempirical methods, neural network potentials (AIMNet2), protein-ligand binding predictions, or automated computational chemistry pipelines. Provides cloud compute resources with no local setup required.
x-cmd/skill 19
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x-is
Value validation and environment detection tool for Shell scripts. Validates input types (integers, floats, IPs), compares file ages, detects runtime environments (TTY, WSL, Termux, Cygwin). Supports batch checking with exit code 0 success / 1 failure. Trigger when user needs to validate input types, detect terminal environment, check file freshness, verify variable states, or perform environment suitability checks (suitable_pkg/suitable_advise). Keywords: validate, check, verify, is, integer, float, positive, negative, range, IP address, file age, interactive, WSL, Termux, environment detection, unset variable, batch check.
x-cmd/skill 19
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qutip
Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED. Best for physics research, open system dynamics, and educational simulations. NOT for circuit-based quantum computing—use qiskit, cirq, or pennylane for quantum algorithms and hardware execution.
x-cmd/skill 19
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kimi
Enhancement module for kimi-cli, integrating AI programming capabilities into the terminal workflow. Core Scenario: When the user wants to launch the Kimi Code agent for coding assistance, upgrades, or session management.
x-cmd/skill 19
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ccmd
Cache command execution results to avoid repeated execution of time-consuming tasks. Core Scenario: When the user needs to speed up workflows involving slow network requests (curl) or complex local queries.
x-cmd/skill 19
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ensembl-database
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
x-cmd/skill 19
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pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
x-cmd/skill 19
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writer
AI text processing module for simplified translation, summarization, and refinement. Core Scenario: When the user needs to translate, polish, or summarize text using pre-configured AI agents.
x-cmd/skill 19
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statistical-analysis
Guided statistical analysis with test selection and reporting. Use when you need help choosing appropriate tests for your data, assumption checking, power analysis, and APA-formatted results. Best for academic research reporting, test selection guidance. For implementing specific models programmatically use statsmodels.
x-cmd/skill 19
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cd
Enhanced cd command with history navigation, fuzzy search, and directory aliases. Core Scenario: When the user needs to quickly jump between historical paths or search for subdirectories using keywords.
x-cmd/skill 19
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protocolsio-integration
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
x-cmd/skill 19
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winget
Enhanced interface for Microsoft's WinGet package manager, supporting mirrors and proxy configuration. Core Scenario: When the user needs to manage Windows applications using the official native package manager.
x-cmd/skill 19
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qiskit
IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production workloads, or needing IBM optimization tools. Best for IBM hardware execution, quantum error mitigation, and enterprise quantum computing. For Google hardware use cirq; for gradient-based quantum ML use pennylane; for open quantum system simulations use qutip.
x-cmd/skill 19
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hi
Display detailed HTTP information and network metadata. Core Scenario: When the user needs a quick summary of their current HTTP environment or request headers.
x-cmd/skill 19
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polars
Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ETL pipelines, faster pandas replacement. For larger-than-RAM data use dask or vaex.
x-cmd/skill 19
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nets
Enhanced netstat interface for viewing internet connections, routing tables, and network statistics. Core Scenario: When the user needs an interactive way to audit network sockets (TCP/UDP) or analyze network tables.
x-cmd/skill 19
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datacommons-client
Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available through Data Commons. Applicable for querying population statistics, GDP figures, unemployment rates, disease prevalence, geographic entity resolution, and exploring relationships between statistical entities.
x-cmd/skill 19
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dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
x-cmd/skill 19
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adaptyv
Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
x-cmd/skill 19
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stat
Display detailed file or file system status with support for structured data exports (JSON, CSV). Core Scenario: When the user needs precise metadata about files or file systems for diagnostics or automation.
x-cmd/skill 19
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diffdock
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
x-cmd/skill 19
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slack-gif-creator
Knowledge and utilities for creating animated GIFs optimized for Slack. Provides constraints, validation tools, and animation concepts. Use when users request animated GIFs for Slack like "make me a GIF of X doing Y for Slack."
x-cmd/skill 19