Topic: codex
8,457 skills in this topic.
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report-generator
高级报告生成专家，支持多格式输出、数据可视化和交互式报告生成。
foryourhealth111-pixel/Vibe-Skills 1,415
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running-clustering-algorithms
Analyze datasets by running clustering algorithms (K-means, DBSCAN, hierarchical) to identify data groups. Use when requesting "run clustering", "cluster analysis", or "group data points". Trigger with relevant phrases based on skill purpose.
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-data-engineer
Database Architect & Operations Engineer (Dara). Use for database design, schema architecture, Supabase configuration, RLS policies, migrations, query optimization, data modelin...
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-architect
Architect (Aria). Use for system architecture (fullstack, backend, frontend, infrastructure), technology stack selection (technical evaluation), API design (REST/GraphQL/tRPC/We...
foryourhealth111-pixel/Vibe-Skills 1,415
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gene-database
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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speckit-tasks
Break down implementation plans into actionable task lists. Use after planning to create a structured task breakdown. Generates tasks.md with ordered, dependency-aware tasks.
foryourhealth111-pixel/Vibe-Skills 1,415
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documentation-lookup
This skill should be used when the user asks about libraries, frameworks, API references, or needs code examples. Activates for setup questions, code generation involving libraries, or mentions of specific frameworks like React, Vue, Next.js, Prisma, Supabase, etc.
foryourhealth111-pixel/Vibe-Skills 1,415
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tiledbvcf
Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.
foryourhealth111-pixel/Vibe-Skills 1,415
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citation-management
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
foryourhealth111-pixel/Vibe-Skills 1,415
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file-organizer
Intelligently organizes your files and folders across your computer by understanding context, finding duplicates, suggesting better structures, and automating cleanup tasks. Reduces cognitive load and keeps your digital workspace tidy without manual effort.
foryourhealth111-pixel/Vibe-Skills 1,415
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reactome-database
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
foryourhealth111-pixel/Vibe-Skills 1,415
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deepagent-toolchain-plan
DeepAgent-style tool discovery for VCO: propose a minimal skill/tool chain (with verification points) and reduce confirm_required friction.
foryourhealth111-pixel/Vibe-Skills 1,415
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context-hunter
Discover codebase patterns, conventions, and unwritten rules before making changes. Use when implementing features, fixing bugs, or refactoring code.
foryourhealth111-pixel/Vibe-Skills 1,415
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bgpt-paper-search
Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.
foryourhealth111-pixel/Vibe-Skills 1,415
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esm
Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.
foryourhealth111-pixel/Vibe-Skills 1,415
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pyhealth
Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).
foryourhealth111-pixel/Vibe-Skills 1,415
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evaluating-code-models
Evaluates code generation models across HumanEval, MBPP, MultiPL-E, and 15+ benchmarks with pass@k metrics. Use when benchmarking code models, comparing coding abilities, testing multi-language support, or measuring code generation quality. Industry standard from BigCode Project used by HuggingFace leaderboards.
foryourhealth111-pixel/Vibe-Skills 1,415
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scvi-tools
This skill should be used when working with single-cell omics data analysis using scvi-tools, including scRNA-seq, scATAC-seq, CITE-seq, spatial transcriptomics, and other single-cell modalities. Use this skill for probabilistic modeling, batch correction, dimensionality reduction, differential expression, cell type annotation, multimodal integration, and spatial analysis tasks.
foryourhealth111-pixel/Vibe-Skills 1,415
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matchms
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics pipelines use pyopenms.
foryourhealth111-pixel/Vibe-Skills 1,415
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get-available-resources
This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.
foryourhealth111-pixel/Vibe-Skills 1,415
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speckit-specify
Create or update feature specifications from natural language descriptions. Use when starting new features or refining requirements. Generates spec.md with user stories, functional requirements, and acceptance criteria following spec-driven development methodology.
foryourhealth111-pixel/Vibe-Skills 1,415
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scikit-bio
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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scientific-schematics
Create publication-quality scientific diagrams using Nano Banana Pro AI with smart iterative refinement. Uses Gemini 3 Pro for quality review. Only regenerates if quality is below threshold for your document type. Specialized in neural network architectures, system diagrams, flowcharts, biological pathways, and complex scientific visualizations.
foryourhealth111-pixel/Vibe-Skills 1,415
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regression-analysis-helper
Regression Analysis Helper - Auto-activating skill for Data Analytics.
Triggers on: regression analysis helper, regression analysis helper
Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415