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Topic: codex

8,457 skills in this topic.

datamol Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.
foryourhealth111-pixel/Vibe-Skills 1,415
clinpgx-database Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
foryourhealth111-pixel/Vibe-Skills 1,415
hypothesis-generation Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses with predictions, propose mechanisms, and design experiments to test them. Follows scientific method framework. For open-ended ideation use scientific-brainstorming; for automated LLM-driven hypothesis testing on datasets use hypogenic.
foryourhealth111-pixel/Vibe-Skills 1,415
imagegen Use when the user asks to generate or edit images via the OpenAI Image API (for example: generate image, edit/inpaint/mask, background removal or replacement, transparent background, product shots, concept art, covers, or batch variants); run the bundled CLI (`scripts/image_gen.py`) and require `OPENAI_API_KEY` for live calls.
foryourhealth111-pixel/Vibe-Skills 1,415
local-vco-roles Codex-local role pack for dialectic multi-agent reviews, designed to be compatible with the local vibe skill.
foryourhealth111-pixel/Vibe-Skills 1,415
geopandas Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.
foryourhealth111-pixel/Vibe-Skills 1,415
explaining-machine-learning-models Build this skill enables AI assistant to provide interpretability and explainability for machine learning models. it is triggered when the user requests explanations for model predictions, insights into feature importance, or help understanding model behavior... Use when appropriate context detected. Trigger with relevant phrases based on skill purpose.
foryourhealth111-pixel/Vibe-Skills 1,415
clinicaltrials-database Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
foryourhealth111-pixel/Vibe-Skills 1,415
market-research-reports Generate comprehensive market research reports (50+ pages) in the style of top consulting firms (McKinsey, BCG, Gartner). Features professional LaTeX formatting, extensive visual generation with scientific-schematics and generate-image, deep integration with research-lookup for data gathering, and multi-framework strategic analysis including Porter Five Forces, PESTLE, SWOT, TAM/SAM/SOM, and BCG Matrix.
foryourhealth111-pixel/Vibe-Skills 1,415
markitdown Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.
foryourhealth111-pixel/Vibe-Skills 1,415
markdown-mermaid-writing Comprehensive markdown and Mermaid diagram writing skill that establishes text-based diagrams as the DEFAULT documentation standard. Use this skill when creating ANY scientific document, report, analysis, or visualization — it ensures all outputs are in version-controlled, token-efficient markdown with embedded Mermaid diagrams as the source of truth, with clear pathways to downstream Python or AI-generated images. Includes full style guides (markdown + mermaid), 24 diagram type references, and 9 document templates ready to use.
foryourhealth111-pixel/Vibe-Skills 1,415
hmdb-database Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
foryourhealth111-pixel/Vibe-Skills 1,415
cosmic-database Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
foryourhealth111-pixel/Vibe-Skills 1,415
gh-address-comments Help address review/issue comments on the open GitHub PR for the current branch using gh CLI; verify gh auth first and prompt the user to authenticate if not logged in.
foryourhealth111-pixel/Vibe-Skills 1,415
docx-comment-reply Reply to comments (批注) in Word .docx/.doc files: extract comment context, draft replies, write threaded replies back, and validate OOXML.
foryourhealth111-pixel/Vibe-Skills 1,415
G2 Legend Expert Expert skill for G2 legend development - provides comprehensive knowledge about legend rendering implementation, component architecture, layout algorithms, and interaction handling. Use when implementing, customizing, or debugging legend functionality in G2 visualizations.
foryourhealth111-pixel/Vibe-Skills 1,415
data-storytelling Transform data into compelling narratives using visualization, context, and persuasive structure. Use when presenting analytics to stakeholders, creating data reports, or building executive presentations.
foryourhealth111-pixel/Vibe-Skills 1,415
flowio Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
foryourhealth111-pixel/Vibe-Skills 1,415
aios-squad-creator Squad Creator (Craft). Use to create, validate, publish and manage squads
foryourhealth111-pixel/Vibe-Skills 1,415
cs-foundations Master discrete mathematics, logic, formal proofs, and computational thinking. Build the mathematical foundation for all computer science.
foryourhealth111-pixel/Vibe-Skills 1,415
medchem Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
foryourhealth111-pixel/Vibe-Skills 1,415
document-skills Umbrella skill for document workflows (PDF/DOCX/XLSX/PPTX). Dispatches to the most specific document skill to reduce noise and improve routing precision.
foryourhealth111-pixel/Vibe-Skills 1,415
docx Document toolkit (.docx). Create/edit documents, tracked changes, comments, formatting preservation, text extraction, for professional document processing.
foryourhealth111-pixel/Vibe-Skills 1,415
chembl-database Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.
foryourhealth111-pixel/Vibe-Skills 1,415