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Topic: codex

8,457 skills in this topic.

deeptools NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
foryourhealth111-pixel/Vibe-Skills 1,415
cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
embedding-strategies Select and optimize embedding models for semantic search and RAG applications. Use when choosing embedding models, implementing chunking strategies, or optimizing embedding quality for specific domains.
foryourhealth111-pixel/Vibe-Skills 1,415
creating-data-visualizations Generate plots, charts, and graphs from data with automatic visualization type selection. Use when requesting "visualization", "plot", "chart", or "graph". Trigger with phrases like 'generate', 'create', or 'scaffold'.
foryourhealth111-pixel/Vibe-Skills 1,415
cs-foundations Master discrete mathematics, logic, formal proofs, and computational thinking. Build the mathematical foundation for all computer science.
foryourhealth111-pixel/Vibe-Skills 1,415
data-storytelling Transform data into compelling narratives using visualization, context, and persuasive structure. Use when presenting analytics to stakeholders, creating data reports, or building executive presentations.
foryourhealth111-pixel/Vibe-Skills 1,415
datamol Pythonic wrapper around RDKit with simplified interface and sensible defaults. Preferred for standard drug discovery including SMILES parsing, standardization, descriptors, fingerprints, clustering, 3D conformers, parallel processing. Returns native rdkit.Chem.Mol objects. For advanced control or custom parameters, use rdkit directly.
foryourhealth111-pixel/Vibe-Skills 1,415
aios-analyst Business Analyst (Atlas). Use for market research, competitive analysis, user research, brainstorming session facilitation, structured ideation workshops, feasibility studies, i...
foryourhealth111-pixel/Vibe-Skills 1,415
adaptyv Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
foryourhealth111-pixel/Vibe-Skills 1,415
data-quality-checker Data Quality Checker - Auto-activating skill for Data Pipelines. Triggers on: data quality checker, data quality checker Part of the Data Pipelines skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
data-exploration-visualization 自动化数据探索和可视化工具，提供从数据加载到专业报告生成的完整EDA解决方案。支持多种图表类型、智能数据诊断、建模评估和HTML报告生成。适用于医疗、金融、电商等领域的数据分析项目。
foryourhealth111-pixel/Vibe-Skills 1,415
document-skills Umbrella skill for document workflows (PDF/DOCX/XLSX/PPTX). Dispatches to the most specific document skill to reduce noise and improve routing precision.
foryourhealth111-pixel/Vibe-Skills 1,415
clinpgx-database Access ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions, for precision medicine and genotype-guided dosing decisions.
foryourhealth111-pixel/Vibe-Skills 1,415
clinicaltrials-database Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.
foryourhealth111-pixel/Vibe-Skills 1,415
correlation-analyzer Correlation Analyzer - Auto-activating skill for Data Analytics. Triggers on: correlation analyzer, correlation analyzer Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
chembl-database Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.
foryourhealth111-pixel/Vibe-Skills 1,415
commit-with-reflection Git提交与调试反思报告生成技能。自动分析开发过程中的错误、调试步骤和解决方案,生成结构化的中文反思报告,并创建包含报告引用的Git提交。触发词:反思提交、智能提交、生成调试报告、commit with reflection。
foryourhealth111-pixel/Vibe-Skills 1,415
code-review-excellence Master effective code review practices to provide constructive feedback, catch bugs early, and foster knowledge sharing while maintaining team morale. Use when reviewing pull requests, establishing review standards, or mentoring developers.
foryourhealth111-pixel/Vibe-Skills 1,415
dnanexus-integration DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
foryourhealth111-pixel/Vibe-Skills 1,415
diffdock Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
foryourhealth111-pixel/Vibe-Skills 1,415
aios-po Product Owner (Pax). Use for backlog management, story refinement, acceptance criteria, sprint planning, and prioritization decisions
foryourhealth111-pixel/Vibe-Skills 1,415
docx-comment-reply Reply to comments (批注) in Word .docx/.doc files: extract comment context, draft replies, write threaded replies back, and validate OOXML.
foryourhealth111-pixel/Vibe-Skills 1,415
pptx Presentation toolkit (.pptx). Create/edit slides, layouts, content, speaker notes, comments, for programmatic presentation creation and modification.
foryourhealth111-pixel/Vibe-Skills 1,415
pdf PDF manipulation toolkit. Extract text/tables, create PDFs, merge/split, fill forms, for programmatic document processing and analysis.
foryourhealth111-pixel/Vibe-Skills 1,415