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Topic: awesome

1,258 skills in this topic.

subagent-driven-development Use when executing implementation plans with independent tasks in the current session
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-orchestrator Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-multi-omics-mofa-integration Multi-Omics Factor Analysis (MOFA2) for unsupervised integration of multiple data modalities. Identifies shared and view-specific sources of variation. Use when integrating RNA-seq, proteomics, methylation, or other omics to discover latent factors driving biological variation across modalities.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-microbiome-differential-abundance Differential abundance testing for microbiome data using compositionally-aware methods like ALDEx2, ANCOM-BC2, and MaAsLin2. Use when identifying taxa that differ between experimental groups while accounting for the compositional nature of microbiome data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-metabolomics-targeted-analysis Targeted metabolomics analysis using MRM/SRM with standard curves. Covers absolute quantification, method validation, and quality assessment. Use when quantifying specific metabolites using calibration curves and internal standards.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-machine-learning-survival-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
depmap Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), drug sensitivity data, and gene effect profiles. Use for identifying cancer-specific vulnerabilities, synthetic lethal interactions, and validating oncology drug targets.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
single-cell-preprocessing-with-omicverse Walk through omicverse's single-cell preprocessing tutorials to QC PBMC3k data, normalise counts, detect HVGs, and run PCA/embedding pipelines on CPU, CPU–GPU mixed, or GPU stacks.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
single-cell-downstream-analysis Checklist-style reference for OmicVerse downstream tutorials covering AUCell scoring, metacell DEG, and related exports.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
clinical-diagnostic-reasoning Identify and counteract cognitive biases in medical decision-making through systematic error analysis and contextual algorithm application. For diagnostic reasoning, treatment decisions, and clinical judgment improvement. NOT for basic medical knowledge, technical procedures, or non-clinical healthcare domains.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-imaging-mass-cytometry-quality-metrics Quality metrics for IMC data including signal-to-noise, channel correlation, tissue integrity, and acquisition QC. Use when assessing data quality before analysis or troubleshooting problematic acquisitions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
cellagent-annotation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
hemoglobinopathy-analysis-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-de-deseq2-basics Perform differential expression analysis using DESeq2 in R/Bioconductor. Use for analyzing RNA-seq count data, creating DESeqDataSet objects, running the DESeq workflow, and extracting results with log fold change shrinkage. Use when performing DE analysis with DESeq2.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-data-visualization-volcano-customization
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
gwas-prs Calculate polygenic risk scores from DTC genetic data using the PGS Catalog
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-data-visualization-genome-browser-tracks
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
radgpt-radiology-reporter
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
glycoengineering Analyze and engineer protein glycosylation. Scan sequences for N-glycosylation sequons (N-X-S/T), predict O-glycosylation hotspots, and access curated glycoengineering tools (NetOGlyc, GlycoShield, GlycoWorkbench). For glycoprotein engineering, therapeutic antibody optimization, and vaccine design.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
geo-database Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
open-notebook Self-hosted, open-source alternative to Google NotebookLM for AI-powered research and document analysis. Use when organizing research materials into notebooks, ingesting diverse content sources (PDFs, videos, audio, web pages, Office documents), generating AI-powered notes and summaries, creating multi-speaker podcasts from research, chatting with documents using context-aware AI, searching across materials with full-text and vector search, or running custom content transformations. Supports 16+ AI providers including OpenAI, Anthropic, Google, Ollama, Groq, and Mistral with complete data privacy through self-hosting.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
writing-plans Use when you have a spec or requirements for a multi-step task, before touching code
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
pyopenms Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
omero-integration Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009