ReddRadar
Topic: autonomous-research
124 skills in this topic.
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draw
Generate diagrams and vector graphics. Supports Mermaid (flowcharts, sequence diagrams, ER diagrams, Gantt charts, mind maps) via mermaid-py, and custom vector graphics (shapes, text, gradients, layers) via cli-anything-inkscape. Outputs PNG/SVG/PDF to workspace/. Use when the user wants to visualize workflows, architecture, data relationships, research timelines, concept maps, or create polished figures for papers.
ZimoLiao/scholaraio 332
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enrich
Enrich paper metadata using LLM extraction. Extract table of contents (TOC), conclusions (L3), and backfill abstracts. Use when the user wants to extract conclusions, build TOC, or backfill missing abstracts. For citation count updates, see the /citations skill.
ZimoLiao/scholaraio 332
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explore
Explore literature by fetching papers from OpenAlex with multi-dimensional filters (ISSN, concept, author, institution, keyword, etc.), building local embeddings, running BERTopic clustering, and multi-mode search (semantic/keyword/unified). Data is isolated in data/explore/<name>/. Use when the user wants to survey a journal, explore a research field, analyze an author's output, or do landscape analysis.
ZimoLiao/scholaraio 332
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export
Export papers from the knowledge base to standard citation formats (BibTeX, RIS, Markdown reference list) or export any Markdown content as a Word DOCX file. Supports exporting all papers, specific papers, or filtered by year/journal. Use when the user needs citation files, wants to import into Zotero/Endnote/Mendeley, needs a reference list for writing, or wants to share a document as Word.
ZimoLiao/scholaraio 332
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graph
Query citation graphs — view a paper's references, find which papers cite it, and analyze shared references between multiple papers. Use when the user asks about citation relationships, reference overlap, or bibliographic connections.
ZimoLiao/scholaraio 332
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gromacs
Use when working on biomolecular molecular dynamics with GROMACS, especially system setup, equilibration, production runs, trajectory analysis, or MM/PBSA-style post-processing.
ZimoLiao/scholaraio 332
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import
Import papers from external reference managers (Endnote XML/RIS, Zotero Web API or local SQLite), or attach a PDF to an existing paper. Handles PDF matching, MinerU conversion, metadata enrichment, and index updates. Use when the user wants to import their existing library from Zotero, Endnote, attach/add a PDF to a paper, or supplement a paper with its PDF.
ZimoLiao/scholaraio 332
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index
Rebuild FTS5 full-text search index or FAISS semantic vector index. Use when the user wants to update or rebuild search indexes after metadata changes.
ZimoLiao/scholaraio 332
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ingest
Use when the user wants to process new papers, patents, theses, documents, or proceedings from inbox into the knowledge base, run the ingest pipeline, or rebuild indexes.
ZimoLiao/scholaraio 332
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insights
Analyze research behavior data — search hot keywords, most-read papers, reading trends, and semantic neighbors you haven't read yet. Use when the user wants to understand their reading habits, discover overlooked papers, or review recent research activity.
ZimoLiao/scholaraio 332
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lammps
Use when working on classical materials simulations with LAMMPS, especially interatomic-potential selection, shock or deformation setups, thermodynamic runs, and structure analysis for solids or nanomaterials.
ZimoLiao/scholaraio 332
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literature-review
Write a literature review based on papers in a workspace. Covers topic organization, narrative structure, gap identification, and BibTeX export. Use when the user wants to draft a literature review, survey a research area, or summarize the state of the art.
ZimoLiao/scholaraio 332
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metrics
View LLM token usage, API call timing, and runtime metrics. Use when the user asks about token consumption, API costs, or performance statistics.
ZimoLiao/scholaraio 332
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openfoam
Use when working on CFD cases with OpenFOAM, especially solver selection, dictionary setup, mesh workflow decisions, turbulence-model choices, and verification of fluid-flow or heat-transfer simulations.
ZimoLiao/scholaraio 332
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paper-writing
Assist with writing sections of a research paper (Introduction, Related Work, Method, Results, Discussion, Conclusion). Leverages workspace papers for citations and evidence. Use when the user wants help drafting or revising specific paper sections.
ZimoLiao/scholaraio 332
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quantum-espresso
Use when working on first-principles materials calculations with Quantum ESPRESSO, especially SCF, band structures, DOS, phonons, electron-phonon coupling, Fermi surfaces, or charge-density analysis.
ZimoLiao/scholaraio 332
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rename
Rename paper directories to standardized Author-Year-Title format based on JSON metadata. Use when the user wants to normalize filenames after metadata corrections.
ZimoLiao/scholaraio 332
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research-gap
Identify research gaps and open questions from the literature in a workspace. Combines topic clustering, citation analysis, and cross-paper comparison. Use when the user wants to find unexplored areas, formulate research questions, or assess where the field is heading.
ZimoLiao/scholaraio 332
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review-response
Draft point-by-point responses to peer review comments. Locates supporting evidence from workspace papers and the original manuscript. Use when the user receives reviewer feedback and needs to write a rebuttal or revision response letter.
ZimoLiao/scholaraio 332
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scientific-runtime
Use when serving scientific CLI tasks through ScholarAIO, especially when the agent should prefer scholaraio toolref, handle partial coverage safely, and avoid turning user work into documentation maintenance.
ZimoLiao/scholaraio 332
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scientific-tool-onboarding
Use when adding or upgrading ScholarAIO support for a new scientific computing tool, especially when the work needs official docs ingestion, toolref integration, lightweight skill design, and end-to-end CLI verification
ZimoLiao/scholaraio 332
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search
Search academic papers in the local ScholarAIO knowledge base. Supports unified search (keyword + semantic fusion), keyword-only (FTS5), semantic-only (FAISS), author search, and federated search across main library, explore databases, and arXiv. Use when the user wants to find papers, look up literature, search by author, explore research topics, or search across multiple sources. For citation rankings and citation count updates, see the /citations skill.
ZimoLiao/scholaraio 332
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setup
Initialize and diagnose the ScholarAIO environment. Run interactive setup wizard (bilingual EN/ZH) to install dependencies, create config files, and configure API keys. Run status check to see what's installed and what's missing. Use when the user wants to set up, install, configure, or troubleshoot ScholarAIO.
ZimoLiao/scholaraio 332
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show
View paper content at different detail levels. L1 (metadata), L2 (abstract), L3 (conclusion), L4 (full text). Use when the user wants to read a paper, see its abstract, conclusion, or full content.
ZimoLiao/scholaraio 332