Topic: ai-agents
18,135 skills in this topic.
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deeptools
NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
x-cmd/skill 19
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slack-gif-creator
Knowledge and utilities for creating animated GIFs optimized for Slack. Provides constraints, validation tools, and animation concepts. Use when users request animated GIFs for Slack like "make me a GIF of X doing Y for Slack."
x-cmd/skill 19
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web-artifacts-builder
Suite of tools for creating elaborate, multi-component claude.ai HTML artifacts using modern frontend web technologies (React, Tailwind CSS, shadcn/ui). Use for complex artifacts requiring state management, routing, or shadcn/ui components - not for simple single-file HTML/JSX artifacts.
x-cmd/skill 19
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geopandas
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.
x-cmd/skill 19
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uname
Enhanced system information display with structured key-value output. Core Scenario: When the user needs a quick, readable summary of kernel version, architecture, and OS name.
x-cmd/skill 19
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biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
x-cmd/skill 19
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webapp-testing
Toolkit for interacting with and testing local web applications using Playwright. Supports verifying frontend functionality, debugging UI behavior, capturing browser screenshots, and viewing browser logs.
x-cmd/skill 19
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uptime
Display system uptime and load averages in structured YAML format. Core Scenario: When the user needs to check system busy state (load) or total runtime in a script-friendly format.
x-cmd/skill 19
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whisper
Local AI speech recognition based on whisper.cpp, supporting transcription and subtitle generation. Core Scenario: When the user needs to transcribe audio to text, generate SRT subtitles, or merge subtitles into video.
x-cmd/skill 19
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onsh
Enhanced interface for xonsh, providing x-cmd integration, documentation search, and AI capabilities. Core Scenario: When the user needs to integrate x-cmd with xonsh or search xonsh documentation via CLI.
x-cmd/skill 19
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paper-2-web
This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.
x-cmd/skill 19
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ll
Search and list information about files, archives, and operating system resources using fzf. Core Scenario: When the user needs an interactive way to explore file metadata or system resource summaries.
x-cmd/skill 19
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matplotlib
Low-level plotting library for full customization. Use when you need fine-grained control over every plot element, creating novel plot types, or integrating with specific scientific workflows. Export to PNG/PDF/SVG for publication. For quick statistical plots use seaborn; for interactive plots use plotly; for publication-ready multi-panel figures with journal styling, use scientific-visualization.
x-cmd/skill 19
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gh
Enhanced GitHub CLI for managing repositories, issues, PRs, actions, and GitHub Models. Core Scenario: When the user needs to automate GitHub workflows, manage secrets, or use GitHub's AI models via CLI.
x-cmd/skill 19
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uninstall
Unified software uninstaller for various package managers (brew, scoop, apt, etc.). Core Scenario: When the user needs to uninstall software regardless of the package manager used.
x-cmd/skill 19
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npx
Enhanced interface for npx, used to execute Node.js packages without local installation. Core Scenario: When the user needs to run a one-off Node.js tool or test a package.
x-cmd/skill 19
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diffdock
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
x-cmd/skill 19
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gitconfig
Manage Git configurations using YAML files for structured and portable setup. Core Scenario: When the user needs to apply complex Git configurations or migrate settings via YAML.
x-cmd/skill 19
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medchem
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
x-cmd/skill 19
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protocolsio-integration
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
x-cmd/skill 19
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gget
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.
x-cmd/skill 19
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pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
x-cmd/skill 19
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gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
x-cmd/skill 19
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scholar-evaluation
Systematically evaluate scholarly work using the ScholarEval framework, providing structured assessment across research quality dimensions including problem formulation, methodology, analysis, and writing with quantitative scoring and actionable feedback.
x-cmd/skill 19