Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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lamindb
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
foryourhealth111-pixel/Vibe-Skills 1,415
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neurokit2
Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements. Applicable for heart rate variability analysis, event-related potentials, complexity measures, autonomic nervous system assessment, psychophysiology research, and multi-modal physiological signal integration.
foryourhealth111-pixel/Vibe-Skills 1,415
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speech
Use when the user asks for text-to-speech narration or voiceover, accessibility reads, audio prompts, or batch speech generation via the OpenAI Audio API; run the bundled CLI (`scripts/text_to_speech.py`) with built-in voices and require `OPENAI_API_KEY` for live calls. Custom voice creation is out of scope.
foryourhealth111-pixel/Vibe-Skills 1,415
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systematic-debugging
Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes
foryourhealth111-pixel/Vibe-Skills 1,415
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anomaly-detector
Anomaly Detector - Auto-activating skill for Data Analytics.
Triggers on: anomaly detector, anomaly detector
Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
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skill-installer
Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos).
foryourhealth111-pixel/Vibe-Skills 1,415
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skill-creator
Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations.
foryourhealth111-pixel/Vibe-Skills 1,415
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manuscript-as-code
Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'final_v7' chaos and ensures submission-ready artifacts.
foryourhealth111-pixel/Vibe-Skills 1,415
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performing-causal-analysis
Fits causal models, estimates impacts, and plots results using CausalPy. Use when performing analysis with DiD, ITS, SC, or RD.
foryourhealth111-pixel/Vibe-Skills 1,415
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speckit-clarify
Structured clarification workflow for underspecified requirements. Use before planning to resolve ambiguities through coverage-based questioning. Records answers in spec clarifications section.
foryourhealth111-pixel/Vibe-Skills 1,415
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architecture-patterns
Implement proven backend architecture patterns including Clean Architecture, Hexagonal Architecture, and Domain-Driven Design. Use when architecting complex backend systems or refactoring existing applications for better maintainability.
foryourhealth111-pixel/Vibe-Skills 1,415
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ralph-loop
Codex-compatible Ralph loop runner with dual engines (compat local state loop + optional open-ralph-wiggum backend).
foryourhealth111-pixel/Vibe-Skills 1,415
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literature-review
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
foryourhealth111-pixel/Vibe-Skills 1,415
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ml-pipeline-workflow
Build end-to-end MLOps pipelines from data preparation through model training, validation, and production deployment. Use when creating ML pipelines, implementing MLOps practices, or automating model training and deployment workflows.
foryourhealth111-pixel/Vibe-Skills 1,415
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performance-testing
Benchmark indicator performance with BenchmarkDotNet. Use for Series/Buffer/Stream benchmarks, regression detection, and optimization patterns. Target 1.5x Series for StreamHub, 1.2x for BufferList.
foryourhealth111-pixel/Vibe-Skills 1,415
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geo-database
Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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vaex
Use this skill for processing and analyzing large tabular datasets (billions of rows) that exceed available RAM. Vaex excels at out-of-core DataFrame operations, lazy evaluation, fast aggregations, efficient visualization of big data, and machine learning on large datasets. Apply when users need to work with large CSV/HDF5/Arrow/Parquet files, perform fast statistics on massive datasets, create visualizations of big data, or build ML pipelines that do not fit in memory.
foryourhealth111-pixel/Vibe-Skills 1,415
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pyopenms
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal processing, feature detection, peptide identification, and quantitative analysis. Apply when working with mass spectrometry data, analyzing proteomics experiments, or processing metabolomics datasets.
foryourhealth111-pixel/Vibe-Skills 1,415
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pptx-posters
Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.
foryourhealth111-pixel/Vibe-Skills 1,415
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designing-experiments
Selects the appropriate quasi-experimental method (DiD, ITS, SC) based on data structure and research questions. Use when the user is unsure which method to apply.
foryourhealth111-pixel/Vibe-Skills 1,415
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subagent-driven-development
Use when executing implementation plans with independent tasks in the current session
foryourhealth111-pixel/Vibe-Skills 1,415
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scholarly-publishing
End-to-end scholarly publishing workflow: manuscript → figures → LaTeX/Word → submission → revision/rebuttal → camera-ready. Includes meta-rules, checklists, repo structure, and case-based guidance.
foryourhealth111-pixel/Vibe-Skills 1,415
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debugging-strategies
Master systematic debugging techniques, profiling tools, and root cause analysis to efficiently track down bugs across any codebase or technology stack. Use when investigating bugs, performance issues, or unexpected behavior.
foryourhealth111-pixel/Vibe-Skills 1,415
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omero-integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
foryourhealth111-pixel/Vibe-Skills 1,415