Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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zinc-database
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clinical-databases-clinvar-lookup
Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. Use when determining clinical significance of variants for diagnostic or research purposes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-tcr-bcr-analysis-vdjtools-analysis
Calculate immune repertoire diversity metrics, compare samples, and track clonal dynamics using VDJtools. Use when analyzing repertoire diversity, finding shared clonotypes, or comparing immune profiles between conditions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-variant-calling-deepvariant
Deep learning-based variant calling with Google DeepVariant. Provides high accuracy for germline SNPs and indels from Illumina, PacBio, and ONT data. Use when calling variants with DeepVariant deep learning caller.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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single-cell-rna-qc
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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nonlinear-solvers
Select and configure nonlinear solvers for f(x)=0 or min F(x). Use for Newton methods, quasi-Newton (BFGS, L-BFGS), Broyden, Anderson acceleration, diagnosing convergence issues, choosing line search vs trust region, and analyzing Jacobian quality.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-liquid-biopsy-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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pyhealth
Comprehensive healthcare AI toolkit for developing, testing, and deploying machine learning models with clinical data. This skill should be used when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, drug recommendation), medical coding systems (ICD, NDC, ATC), physiological signals (EEG, ECG), healthcare datasets (MIMIC-III/IV, eICU, OMOP), or implementing deep learning models for healthcare applications (RETAIN, SafeDrug, Transformer, GNN).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-systems-biology-metabolic-reconstruction
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-copy-number-cnv-visualization
Visualize copy number profiles, segments, and compare across samples. Create publication-quality plots of CNV data from CNVkit, GATK, or other callers. Use when creating genome-wide CNV plots, sample heatmaps, or chromosome-level visualizations.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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post-processing
Extract, analyze, and visualize simulation output data. Use for field extraction, time series analysis, line profiles, statistical summaries, derived quantity computation, result comparison to references, and automated report generation from simulation results.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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research-lookup
Look up current research information using Perplexity's Sonar Pro Search or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent studies, technical documentation, and general research information with citations.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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arxiv-search
Search arXiv physics, math, and computer science preprints using natural language queries. Powered by Valyu semantic search.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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lab-results
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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data-stats-analysis
Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-ribo-seq-riboseq-preprocessing
Preprocess ribosome profiling data including adapter trimming, size selection, rRNA removal, and alignment. Use when preparing Ribo-seq reads for downstream analysis of translation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-de-edger-basics
Perform differential expression analysis using edgeR in R/Bioconductor. Use for analyzing RNA-seq count data with the quasi-likelihood F-test framework, creating DGEList objects, normalization, dispersion estimation, and statistical testing. Use when performing DE analysis with edgeR.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-sashimi-plots
Creates sashimi plots showing RNA-seq read coverage and splice junction counts using ggsashimi or rmats2sashimiplot. Visualizes differential splicing events with grouped samples and junction read support. Use when visualizing specific splicing events or validating differential splicing results.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-duplicate-handling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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gene-panel-design-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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organoid-drug-response-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-genome-intervals-gtf-gff-handling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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brainstorming
You MUST use this before any creative work - creating features, building components, adding functionality, or modifying behavior. Explores user intent, requirements and design before implementation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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medical-research-toolkit
Query 14+ biomedical databases for drug repurposing, target discovery, clinical trials, and literature research. Access ChEMBL, PubMed, ClinicalTrials.gov, OpenTargets, OpenFDA, OMIM, Reactome, KEGG, UniProt, and more through a unified MCP endpoint. Use when researching disease targets, finding approved/investigational drugs, searching clinical evidence, discovering genetic associations, or analyzing compound bioactivity data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009