Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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bio-variant-calling
Call SNPs and indels from aligned reads using bcftools mpileup and call. Use when detecting variants from BAM files or generating VCF from alignments.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-epidemiological-genomics-transmission-inference
Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. Estimate who-infected-whom from genomic and epidemiological data. Use when investigating outbreak transmission chains or identifying superspreaders.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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matchms
Mass spectrometry analysis. Process mzML/MGF/MSP, spectral similarity (cosine, modified cosine), metadata harmonization, compound ID, for metabolomics and MS data processing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-population-genetics-scikit-allel-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tiledbvcf
Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-immunoinformatics-mhc-binding-prediction
Predict peptide-MHC class I and II binding affinity using MHCflurry and NetMHCpan neural network models. Identify potential T-cell epitopes from protein sequences. Use when predicting MHC binding for vaccine design or neoantigen identification.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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equity-scorer
Compute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots, and a composite HEIM Equity Score with markdown reports.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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psychologist-analyst
Analyzes events through psychological lens using cognitive psychology, social psychology, developmental psychology,
clinical psychology, and neuroscience. Provides insights on behavior, cognition, emotion, motivation, group dynamics,
decision-making biases, mental health, and individual differences.
Use when: Behavioral patterns, decision-making, group behavior, mental health, leadership, persuasion, trauma, development.
Evaluates: Cognitive processes, emotional responses, motivations, biases, group dynamics, personality, mental states.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-flow-cytometry-compensation-transformation
Spillover compensation and data transformation for flow cytometry. Covers compensation matrix calculation, application, and biexponential/arcsinh transforms. Use when correcting spectral overlap between fluorophores or transforming data for analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-spatial-transcriptomics-spatial-proteomics
Analyzes spatial proteomics data from CODEX, IMC, and MIBI platforms including cell segmentation and protein colocalization. Use when working with multiplexed imaging data, analyzing protein spatial patterns, or integrating spatial proteomics with transcriptomics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-longread-alignment
Align long reads using minimap2 for Oxford Nanopore and PacBio data. Supports various presets for different read types and applications. Use when aligning ONT or PacBio reads to a reference genome for variant calling, SV detection, or coverage analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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deep-visual-proteomics-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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gsea-enrichment-analysis
Gene set enrichment analysis with correct geneset format handling. Critical guidance for loading pathway databases and running enrichment in OmicVerse.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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requesting-code-review
Use when completing tasks, implementing major features, or before merging to verify work meets requirements
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-compressed-files
Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. Use when working with .gz or .bz2 sequence files. Use BGZF for indexable compressed files.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-cfdna-preprocessing
Preprocesses cell-free DNA sequencing data including adapter trimming, alignment optimized for short fragments, and UMI-aware duplicate removal using fgbio. Applies cfDNA-specific quality thresholds and fragment length filtering. Use when processing plasma cfDNA sequencing data before downstream analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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multimodal-medical-imaging
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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spatial-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-bedgraph-handling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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biomedical-data-analysis
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-network-pharmacology
Construct and analyze compound-target-disease networks for drug repurposing, polypharmacology discovery, and systems pharmacology. Builds multi-layer networks from ChEMBL, OpenTargets, STRING, DrugBank, Reactome, FAERS, and 60+ other ToolUniverse tools. Calculates Network Pharmacology Scores (0-100), identifies repurposing candidates, predicts mechanisms, and analyzes polypharmacology. Use when users ask about drug repurposing via network analysis, multi-target drug effects, compound-target-disease networks, systems pharmacology, or polypharmacology.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-imc-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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armored-cart-design-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009