Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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sc-best-practices-complete-100percent
单细胞分析最佳实践集合 - 100%完整覆盖（410个文件：407个HTML文档+3个项目文档）
Ketomihine/my_skills
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spatialdata-io-docs-local
SpatialData-IO 空间数据I/O工具包 - 100%覆盖85个核心文件（20个空间平台+6个API+6个CLI+53个生成器文档）
Ketomihine/my_skills
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scanpy-complete
Scanpy 单细胞分析工具包 - 100%覆盖文档（API+教程+预处理+分析+可视化）
Ketomihine/my_skills
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banksy
BANKSY spatial transcriptomics analysis - comprehensive documentation with notebooks and API
Ketomihine/my_skills
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remote-server-executor
Remote SSH server management and code execution with paramiko-based performance optimization
Ketomihine/my_skills
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scvitools
Comprehensive skill for scvi-tools - Deep probabilistic models for single-cell omics analysis. Use for scVI, scANVI, totalVI, MultiVI models, single-cell RNA-seq integration, batch correction, differential expression, and multimodal data analysis.
Ketomihine/my_skills
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seurat-local
Seurat 文档本地镜像（Satija Lab docs，包含 seurat/ 子目录与 archive）
Ketomihine/my_skills
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scarches-docs-complete
scArches 文档本地镜像全量
Ketomihine/my_skills
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banksy-merged-v3
BANKSY spatial transcriptomics analysis tool - complete documentation with notebooks and source code
Ketomihine/my_skills
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developing-heart-local
Developing Heart Atlas notebooks converted to HTML (local)
Ketomihine/my_skills
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giottosuite-local
Giotto Suite 空间转录组学分析工具包 - 100%覆盖718个文件（37个教程+285个核心API+4个数据文档+344个扩展函数+49个工具函数）
Ketomihine/my_skills
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scvitools-complete
scvi-tools 单细胞深度学习框架 - 100%覆盖文档（完整API+教程+模型训练+多模态整合）
Ketomihine/my_skills
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cellcharter-local-optimized
CellCharter spatial transcriptomics analysis toolkit - complete documentation with precise file name-based categorization
Ketomihine/my_skills
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envi-pkg-local
ENVI 本地文档+教程+源码 - 100%覆盖13个文件（Sphinx build + 手动转换 notebooks/py）
Ketomihine/my_skills
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palantir-docs-local
Palantir 本地文档（en/latest）
Ketomihine/my_skills
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seurat-single-cell-analysis
R-based single cell analysis using Seurat v5 for .rds/.rdata files
Ketomihine/my_skills
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spatialdata
SpatialData framework for handling spatial multi-modal and multi-scale data. Use this skill for questions about spatial omics data analysis, visualization, and the SpatialData Python ecosystem.
Ketomihine/my_skills
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archr-local
ArchR docs served from downloaded_docs/archr_scrape - comprehensive scATAC-seq analysis toolkit with all HTML files explicitly listed
Ketomihine/my_skills
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sc-best-practices-auto
单细胞分析最佳实践集合——目录索引自动发现，完整抓取HTML/MD与代码块
Ketomihine/my_skills
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banksy-merged-v4
BANKSY spatial transcriptomics analysis tool - complete documentation with precise file name-based categorization
Ketomihine/my_skills
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test
HTML documentation test
Ketomihine/my_skills
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mudata-complete
MuData 多模态数据分析工具包 - 100%覆盖文档（API+教程+IO指南+核心功能）
Ketomihine/my_skills
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cellchat-pkg-local-fixed
CellChat cell-cell communication analysis toolkit - complete documentation with precise file name-based categorization
Ketomihine/my_skills
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developing-heart-local-improved
Developing Heart Atlas - comprehensive cardiac development analysis with spatial multi-omics integration
Ketomihine/my_skills