Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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pyopenms
Complete mass spectrometry analysis platform. Use for proteomics workflows feature detection, peptide identification, protein quantification, and complex LC-MS/MS pipelines. Supports extensive file formats and algorithms. Best for proteomics, comprehensive MS data processing. For simple spectral comparison and metabolite ID use matchms.
x-cmd/skill 19
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pptx-posters
Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.
x-cmd/skill 19
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omero-integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
x-cmd/skill 19
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clinical-reports
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.
x-cmd/skill 19
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rdkit
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.
x-cmd/skill 19
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clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
x-cmd/skill 19
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pydeseq2
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
x-cmd/skill 19
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ena-database
Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.
x-cmd/skill 19
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labarchive-integration
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
x-cmd/skill 19
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deepchem
Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-trained models, diverse molecular representations. For graph-first PyTorch workflows use torchdrug; for benchmark datasets use pytdc.
x-cmd/skill 19
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Just CLI
This skill should be used when the user asks to "create a justfile", "write just recipes", "configure just settings", "add just modules", "use just attributes", "set up task automation", mentions justfile, just command runner, or task automation with just.
jakmaz/dotfiles 7
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typst
Typst document creation and package development. Use when: (1) Working with .typ files, (2) User mentions typst, typst.toml, or typst-cli, (3) Creating or using Typst packages, (4) Developing document templates, (5) Converting Markdown/LaTeX to Typst
jakmaz/dotfiles 7
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frontend-design
Create distinctive, production-grade frontend interfaces with high design quality. Use this skill when the user asks to build web components, pages, artifacts, posters, or applications (examples include websites, landing pages, dashboards, React components, HTML/CSS layouts, or when styling/beautifying any web UI). Generates creative, polished code and UI design that avoids generic AI aesthetics.
jakmaz/dotfiles 7
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nextjs-motion-animations
Motion-based animation system for Next.js with performance-optimized patterns
jakmaz/dotfiles 7
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mochi-flashcard
Creates language flashcards in Mochi Cards via API. Use this skill whenever the user wants to add, save, or create a flashcard for a Dutch or Spanish word, phrase, verb, noun, adjective, or adverb. Triggers on inputs like "add X to Mochi", "create a card for X", "save X as a flashcard", or any time the user provides a foreign word/phrase and wants it stored. Always use this skill — don't just explain what to do, actually call the API.
jakmaz/dotfiles 7
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sparkbtcbot-proxy-deploy
Deploy a serverless Spark Bitcoin L2 proxy on Vercel with spending limits, auth, and Redis logging. Use when user wants to set up a new proxy, configure env vars, deploy to Vercel, or manage the proxy infrastructure.
echennells/sparkbtcbot-proxy
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sparkbtcbot-proxy
Use a Spark Bitcoin L2 wallet proxy for AI agents via HTTP API. Check balances, send payments, create invoices, pay L402 paywalls — all without holding the mnemonic. Use when user mentions "Spark proxy," "wallet API," "L402," "proxy payment," "bearer token auth," or wants secured Bitcoin capabilities for an agent.
echennells/sparkbtcbot-proxy
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owasp-mobile-security-checker
Use when performing security audits, vulnerability assessments, or compliance checks on Flutter or mobile applications. Covers OWASP Mobile Top 10 (2024) — hardcoded secrets (M1), insecure storage (M9), weak cryptography (M10), network issues (M5), and 6 more categories with automated scanners and remediation guidance.
Harishwarrior/flutter-claude-skills 27
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flutter-tester
Use when creating, writing, fixing, or reviewing tests in a Flutter project. Covers unit tests, widget tests, integration tests, Riverpod provider testing, and Mockito mocking. Provides Given-When-Then patterns, layer isolation strategies, and test setup for GetIt, SharedPreferences, and FakeDatabase.
Harishwarrior/flutter-claude-skills 27
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sparkbtcbot
Set up Spark Bitcoin L2 wallet capabilities for AI agents. Initialize wallets from mnemonic, transfer sats and tokens, create/pay Lightning invoices, pay L402 paywalls, manage deposits and withdrawals. Use when user mentions "Spark wallet," "Spark Bitcoin," "BTKN tokens," "Spark L2," "Spark SDK," "Spark payment," "Spark transfer," "Spark invoice," "L402," "Lightning paywall," or wants Bitcoin L2 capabilities for an agent.
echennells/sparkbtcbot-skill 3
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refactor-break-bw-compat
Refactor by removing backward compatibility and legacy layers. Use when modernizing APIs, cleaning up migration debt, removing compat shims, or eliminating stale feature flags.
OutlineDriven/odin-claude-plugin 17
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pr-merge-temporal
Merge multiple PRs into a temporal integration branch before merging to base, with ordered conflict resolution. Use when you want to validate a set of PRs together on a staging branch before advancing the base branch.
OutlineDriven/odin-claude-plugin 17
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tests-adversarial
Write adversarial tests that intentionally stress failure paths. Use when hardening error handling, stress-testing assumptions, validating boundary behavior, or hunting silent failures.
OutlineDriven/odin-claude-plugin 17
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srgn-cli
Practical guide for building safe, syntax-aware srgn CLI commands for source-code search and transformation. Use when users ask for srgn commands, scoped refactors (comments/docstrings/imports/functions), multi-file rewrites with --glob, custom tree-sitter query usage, or CI-style checks with --fail-any/--fail-none.
OutlineDriven/odin-claude-plugin 17