Agent skills
Skills you can use with AI coding agents, indexed from public GitHub repositories.
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pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
ljchg12-hue/dotfiles 1
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context-initialization
Always Auto-invoked skill that creates/updates workspace AGENTS.md to instruct the agent to always search for existing skills before attempting any scientific task.
ljchg12-hue/dotfiles 1
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get-available-resources
This skill should be used at the start of any computationally intensive scientific task to detect and report available system resources (CPU cores, GPUs, memory, disk space). It creates a JSON file with resource information and strategic recommendations that inform computational approach decisions such as whether to use parallel processing (joblib, multiprocessing), out-of-core computing (Dask, Zarr), GPU acceleration (PyTorch, JAX), or memory-efficient strategies. Use this skill before running analyses, training models, processing large datasets, or any task where resource constraints matter.
ljchg12-hue/dotfiles 1
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exploratory-data-analysis
EDA toolkit. Analyze CSV/Excel/JSON/Parquet files, statistical summaries, distributions, correlations, outliers, missing data, visualizations, markdown reports, for data profiling and insights.
ljchg12-hue/dotfiles 1
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scientific-visualization
Create publication figures with matplotlib/seaborn/plotly. Multi-panel layouts, error bars, significance markers, colorblind-safe, export PDF/EPS/TIFF, for journal-ready scientific plots.
ljchg12-hue/dotfiles 1
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scientific-writing
Write scientific manuscripts. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), abstracts, for research papers and journal submissions.
ljchg12-hue/dotfiles 1
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peer-review
Systematic peer review toolkit. Evaluate methodology, statistics, design, reproducibility, ethics, figure integrity, reporting standards, for manuscript and grant review across disciplines.
ljchg12-hue/dotfiles 1
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literature-review
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
ljchg12-hue/dotfiles 1
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scientific-critical-thinking
Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.
ljchg12-hue/dotfiles 1
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scientific-brainstorming
Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving.
ljchg12-hue/dotfiles 1
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statistical-analysis
Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research.
ljchg12-hue/dotfiles 1
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hypothesis-generation
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
ljchg12-hue/dotfiles 1
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scholar-evaluation
Systematic framework for evaluating scholarly and research work based on the ScholarEval methodology. This skill should be used when assessing research papers, evaluating literature reviews, scoring research methodologies, analyzing scientific writing quality, or applying structured evaluation criteria to academic work. Provides comprehensive assessment across multiple dimensions including problem formulation, literature review, methodology, data collection, analysis, results interpretation, and scholarly writing quality.
ljchg12-hue/dotfiles 1
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pdf
PDF manipulation toolkit. Extract text/tables, create PDFs, merge/split, fill forms, for programmatic document processing and analysis.
ljchg12-hue/dotfiles 1
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ml-pipeline-workflow
Build end-to-end MLOps pipelines from data preparation through model training, validation, and production deployment. Use when creating ML pipelines, implementing MLOps practices, or automating model training and deployment workflows.
ljchg12-hue/dotfiles 1
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nft-standards
Implement NFT standards (ERC-721, ERC-1155) with proper metadata handling, minting strategies, and marketplace integration. Use when creating NFT contracts, building NFT marketplaces, or implementing digital asset systems.
ljchg12-hue/dotfiles 1
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web3-testing
Test smart contracts comprehensively using Hardhat and Foundry with unit tests, integration tests, and mainnet forking. Use when testing Solidity contracts, setting up blockchain test suites, or validating DeFi protocols.
ljchg12-hue/dotfiles 1
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defi-protocol-templates
Implement DeFi protocols with production-ready templates for staking, AMMs, governance, and lending systems. Use when building decentralized finance applications or smart contract protocols.
ljchg12-hue/dotfiles 1
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solidity-security
Master smart contract security best practices to prevent common vulnerabilities and implement secure Solidity patterns. Use when writing smart contracts, auditing existing contracts, or implementing security measures for blockchain applications.
ljchg12-hue/dotfiles 1
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secure-file-deletion
Securely delete files beyond recovery using overwriting techniques, ensuring data privacy and compliance with data protection regulations
ljchg12-hue/dotfiles 1
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verified-information-generator
Verified information generation and validation
ljchg12-hue/dotfiles 1
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youtube-transcript-fetcher
Extract and download YouTube video transcripts and subtitles for content analysis and accessibility
ljchg12-hue/dotfiles 1
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article-extraction
Extract clean article content from web pages, removing ads and clutter for reading and archiving
ljchg12-hue/dotfiles 1
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backend-expert-advisor
Backend expert guidance for API/DB/Security/Architecture
ljchg12-hue/dotfiles 1