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Topic: opencode

1,723 skills in this topic.

metabolomics-workbench-database Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
foryourhealth111-pixel/Vibe-Skills 1,415
scikit-bio Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-checklist Generate custom quality checklists for validating requirements completeness and clarity. Use to create unit tests for English that ensure spec quality before implementation.
foryourhealth111-pixel/Vibe-Skills 1,415
regression-analysis-helper Regression Analysis Helper - Auto-activating skill for Data Analytics. Triggers on: regression analysis helper, regression analysis helper Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
running-clustering-algorithms Analyze datasets by running clustering algorithms (K-means, DBSCAN, hierarchical) to identify data groups. Use when requesting "run clustering", "cluster analysis", or "group data points". Trigger with relevant phrases based on skill purpose.
foryourhealth111-pixel/Vibe-Skills 1,415
pubmed-database Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
foryourhealth111-pixel/Vibe-Skills 1,415
geniml This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-tasks Break down implementation plans into actionable task lists. Use after planning to create a structured task breakdown. Generates tasks.md with ordered, dependency-aware tasks.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-taskstoissues Convert tasks from tasks.md into GitHub issues. Use after task breakdown to track work items in GitHub project management.
foryourhealth111-pixel/Vibe-Skills 1,415
similarity-search-patterns Implement efficient similarity search with vector databases. Use when building semantic search, implementing nearest neighbor queries, or optimizing retrieval performance.
foryourhealth111-pixel/Vibe-Skills 1,415
speckit-specify Create or update feature specifications from natural language descriptions. Use when starting new features or refining requirements. Generates spec.md with user stories, functional requirements, and acceptance criteria following spec-driven development methodology.
foryourhealth111-pixel/Vibe-Skills 1,415
tdd-guide Test-driven development wrapper for vibe coding flow. Enforces RED -> GREEN -> REFACTOR and >=80% coverage target.
foryourhealth111-pixel/Vibe-Skills 1,415
string-database Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.
foryourhealth111-pixel/Vibe-Skills 1,415
sympy Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives, integrals, limits), manipulating algebraic expressions, working with matrices symbolically, physics calculations, number theory problems, geometry computations, and generating executable code from mathematical expressions. Apply this skill when the user needs exact symbolic results rather than numerical approximations, or when working with mathematical formulas that contain variables and parameters.
foryourhealth111-pixel/Vibe-Skills 1,415
torch_geometric Compatibility alias for the underscore PyG skill name. Delegate to the canonical local `torch-geometric` payload while preserving route compatibility.
foryourhealth111-pixel/Vibe-Skills 1,415
visualization-best-practices Visualization Best Practices - Auto-activating skill for Data Analytics. Triggers on: visualization best practices, visualization best practices Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
transformer-lens-interpretability Provides guidance for mechanistic interpretability research using TransformerLens to inspect and manipulate transformer internals via HookPoints and activation caching. Use when reverse-engineering model algorithms, studying attention patterns, or performing activation patching experiments.
foryourhealth111-pixel/Vibe-Skills 1,415
statistics-math Statistics, probability, linear algebra, and mathematical foundations for data science
foryourhealth111-pixel/Vibe-Skills 1,415
think-harder 4-phase structured analysis wrapper for vibe pre-routing (compatible with claude-code-settings think-harder semantics).
foryourhealth111-pixel/Vibe-Skills 1,415
webthinker-deep-research Deep web research for VCO: multi-hop search+browse+extract with an auditable action trace and a structured report (WebThinker-style).
foryourhealth111-pixel/Vibe-Skills 1,415
statsmodels Statistical modeling toolkit. OLS, GLM, logistic, ARIMA, time series, hypothesis tests, diagnostics, AIC/BIC, for rigorous statistical inference and econometric analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
spec-kit-vibe-compat Compatibility router for /speckit.* workflows into /vibe-first Codex execution.
foryourhealth111-pixel/Vibe-Skills 1,415
windows-hook-debugging Windows环境下Claude Code插件Hook执行错误的诊断与修复。当遇到hook error、cannot execute binary file、.sh regex误匹配、WSL/Git Bash冲突时使用。
foryourhealth111-pixel/Vibe-Skills 1,415
vibe-upgrade Upgrade the local Vibe-Skills installation to the latest official default-branch state while keeping canonical vibe as the only governed runtime.
foryourhealth111-pixel/Vibe-Skills 1,415