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Topic: opencode

1,723 skills in this topic.

systematic-debugging Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes
foryourhealth111-pixel/Vibe-Skills 1,415
clinical-decision-support Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
foryourhealth111-pixel/Vibe-Skills 1,415
scholarly-publishing End-to-end scholarly publishing workflow: manuscript → figures → LaTeX/Word → submission → revision/rebuttal → camera-ready. Includes meta-rules, checklists, repo structure, and case-based guidance.
foryourhealth111-pixel/Vibe-Skills 1,415
performing-causal-analysis Fits causal models, estimates impacts, and plots results using CausalPy. Use when performing analysis with DiD, ITS, SC, or RD.
foryourhealth111-pixel/Vibe-Skills 1,415
data-normalization-tool Data Normalization Tool - Auto-activating skill for ML Training. Triggers on: data normalization tool, data normalization tool Part of the ML Training skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
debugging-strategies Master systematic debugging techniques, profiling tools, and root cause analysis to efficiently track down bugs across any codebase or technology stack. Use when investigating bugs, performance issues, or unexpected behavior.
foryourhealth111-pixel/Vibe-Skills 1,415
ml-pipeline-workflow Build end-to-end MLOps pipelines from data preparation through model training, validation, and production deployment. Use when creating ML pipelines, implementing MLOps practices, or automating model training and deployment workflows.
foryourhealth111-pixel/Vibe-Skills 1,415
docs-write Write documentation following Metabase's conversational, clear, and user-focused style. Use when creating or editing documentation files (markdown, MDX, etc.).
foryourhealth111-pixel/Vibe-Skills 1,415
etetoolkit Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
foryourhealth111-pixel/Vibe-Skills 1,415
fda-database Query openFDA API for drugs, devices, adverse events, recalls, regulatory submissions (510k, PMA), substance identification (UNII), for FDA regulatory data analysis and safety research.
foryourhealth111-pixel/Vibe-Skills 1,415
manuscript-as-code Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'final_v7' chaos and ensures submission-ready artifacts.
foryourhealth111-pixel/Vibe-Skills 1,415
gtars High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment analysis in computational genomics and machine learning applications.
foryourhealth111-pixel/Vibe-Skills 1,415
lamindb This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
foryourhealth111-pixel/Vibe-Skills 1,415
labarchive-integration Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
foryourhealth111-pixel/Vibe-Skills 1,415
pptx-posters Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters instead. This skill provides modern web-based poster design with responsive layouts and easy visual integration.
foryourhealth111-pixel/Vibe-Skills 1,415
architecture-patterns Implement proven backend architecture patterns including Clean Architecture, Hexagonal Architecture, and Domain-Driven Design. Use when architecting complex backend systems or refactoring existing applications for better maintainability.
foryourhealth111-pixel/Vibe-Skills 1,415
xlsx Spreadsheet toolkit (.xlsx/.csv). Create/edit with formulas/formatting, analyze data, visualization, recalculate formulas, for spreadsheet processing and analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
verification-before-completion Use when about to claim work is complete, fixed, or passing, before committing or creating PRs - requires running verification commands and confirming output before making any success claims; evidence before assertions always
foryourhealth111-pixel/Vibe-Skills 1,415
aios-ux-design-expert UX/UI Designer & Design System Architect (Uma). Complete design workflow - user research, wireframes, design systems, token extraction, component building, and quality assurance
foryourhealth111-pixel/Vibe-Skills 1,415
smart-file-writer Intelligent file write error handler: diagnoses permissions, disk space, path length, file locks before retrying. Auto-activates on 'Error writing file', 'Permission denied', 'Access denied', 'No space left', file write failures.
foryourhealth111-pixel/Vibe-Skills 1,415
sparse-autoencoder-training Provides guidance for training and analyzing Sparse Autoencoders (SAEs) using SAELens to decompose neural network activations into interpretable features. Use when discovering interpretable features, analyzing superposition, or studying monosemantic representations in language models.
foryourhealth111-pixel/Vibe-Skills 1,415
umap-learn UMAP dimensionality reduction. Fast nonlinear manifold learning for 2D/3D visualization, clustering preprocessing (HDBSCAN), supervised/parametric UMAP, for high-dimensional data.
foryourhealth111-pixel/Vibe-Skills 1,415
aios-dev Full Stack Developer (Dex). Use for code implementation, debugging, refactoring, and development best practices
foryourhealth111-pixel/Vibe-Skills 1,415
performance-testing Benchmark indicator performance with BenchmarkDotNet. Use for Series/Buffer/Stream benchmarks, regression detection, and optimization patterns. Target 1.5x Series for StreamHub, 1.2x for BufferList.
foryourhealth111-pixel/Vibe-Skills 1,415