Topic: openclaw-skills
1,539 skills in this topic.
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etetoolkit
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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parameter-optimization
Explore and optimize simulation parameters via design of experiments (DOE), sensitivity analysis, and optimizer selection. Use for calibration, uncertainty studies, parameter sweeps, LHS sampling, Sobol analysis, surrogate modeling, or Bayesian optimization setup.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-clinical-guidelines
Search and retrieve clinical practice guidelines across 12+ authoritative sources including NICE, WHO, ADA, AHA/ACC, NCCN, SIGN, CPIC, CMA, CTFPHC, GIN, MAGICapp, PubMed, EuropePMC, TRIP, and OpenAlex. Covers disease management, cardiology, oncology, diabetes, pharmacogenomics, and more. Use when users ask about clinical guidelines, treatment recommendations, standard of care, evidence-based medicine, or drug-gene dosing recommendations.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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vcf-basics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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vcf-statistics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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ukb-navigator
Semantic search across UK Biobank's 12,000+ data fields and publications — find the right variables for your research question.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-splicing-qc
Assesses RNA-seq data quality for splicing analysis including junction saturation curves, splice site strength scoring, and junction coverage metrics using RSeQC. Use when evaluating data suitability for splicing analysis or troubleshooting low event detection.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-multi-omics-integration
Integrate and analyze multiple omics datasets (transcriptomics, proteomics, epigenomics, genomics, metabolomics) for systems biology and precision medicine. Performs cross-omics correlation, multi-omics clustering (MOFA+, NMF), pathway-level integration, and sample matching. Coordinates ToolUniverse skills for expression data (RNA-seq), epigenomics (methylation, ChIP-seq), variants (SNVs, CNVs), protein interactions, and pathway enrichment. Use when analyzing multi-omics datasets, performing integrative analysis, discovering multi-omics biomarkers, studying disease mechanisms across molecular layers, or conducting systems biology research that requires coordinated analysis of transcriptome, genome, epigenome, proteome, and metabolome data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-single-cell-cell-communication
Infer cell-cell communication networks from scRNA-seq data using CellChat, NicheNet, and LIANA for ligand-receptor interaction analysis. Use when inferring ligand-receptor interactions between cell types.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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jaspar-database
Query JASPAR for transcription factor binding site (TFBS) profiles (PWMs/PFMs). Search by TF name, species, or class; scan DNA sequences for TF binding sites; compare matrices; essential for regulatory genomics, motif analysis, and GWAS regulatory variant interpretation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-spatial-transcriptomics-spatial-domains
Identify spatial domains and tissue regions in spatial transcriptomics data using Squidpy and Scanpy. Cluster spots considering both expression and spatial context to define anatomical regions. Use when identifying tissue domains or spatial regions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tooluniverse-metabolomics-analysis
Analyze metabolomics data including metabolite identification, quantification, pathway analysis, and metabolic flux. Processes LC-MS, GC-MS, NMR data from targeted and untargeted experiments. Performs normalization, statistical analysis, pathway enrichment, metabolite-enzyme integration, and biomarker discovery. Use when analyzing metabolomics datasets, identifying differential metabolites, studying metabolic pathways, integrating with transcriptomics/proteomics, discovering metabolic biomarkers, performing flux balance analysis, or characterizing metabolic phenotypes in disease, drug response, or physiological conditions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-epitranscriptomics-m6a-peak-calling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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anndata
This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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tumor-clonal-evolution-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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variant-calling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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dispatching-parallel-agents
Use when facing 2+ independent tasks that can be worked on without shared state or sequential dependencies
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-batch-processing
Process multiple sequence files in batch using Biopython. Use when working with many files, merging/splitting sequences, or automating file operations across directories.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-workflows-atacseq-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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polars
Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ETL pipelines, faster pandas replacement. For larger-than-RAM data use dask or vaex.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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variant-normalization
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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deepchem
Molecular machine learning toolkit. Property prediction (ADMET, toxicity), GNNs (GCN, MPNN), MoleculeNet benchmarks, pretrained models, featurization, for drug discovery ML.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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consensus-sequences
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-machine-learning-omics-classifiers
FreedomIntelligence/OpenClaw-Medical-Skills 2,009