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Topic: medical

897 skills in this topic.

flowio Parse FCS (Flow Cytometry Standard) files v2.0-3.1. Extract events as NumPy arrays, read metadata/channels, convert to CSV/DataFrame, for flow cytometry data preprocessing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
ontology-validator Validate material sample annotations and data structures against ontology constraints. Use when checking if CMSO annotations are correct, verifying that required properties are present, or validating that object property relationships have consistent domain and range. Catches unknown classes, unknown properties, domain mismatches, and missing required fields.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
cobrapy Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
fhir-development
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
opentrons-integration Lab automation platform for Flex/OT-2 robots. Write Protocol API v2 protocols, liquid handling, hardware modules (heater-shaker, thermocycler), labware management, for automated pipetting workflows.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-alignment-validation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
cancer-metabolism-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
regulatory-drafter
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-alignment-pairwise Perform pairwise sequence alignment using Biopython Bio.Align.PairwiseAligner. Use when comparing two sequences, finding optimal alignments, scoring similarity, and identifying local or global matches between DNA, RNA, or protein sequences.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
crisis-detection-intervention-ai Detect crisis signals in user content using NLP, mental health sentiment analysis, and safe intervention protocols. Implements suicide ideation detection, automated escalation, and crisis resource integration. Use for mental health apps, recovery platforms, support communities. Activate on "crisis detection", "suicide prevention", "mental health NLP", "intervention protocol". NOT for general sentiment analysis, medical diagnosis, or replacing professional help.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
fhir-developer-skill FHIR API development guide for building healthcare endpoints. Use when: (1) Creating FHIR REST endpoints (Patient, Observation, Encounter, Condition, MedicationRequest), (2) Validating FHIR resources and returning proper HTTP status codes and error responses, (3) Implementing SMART on FHIR authorization and OAuth scopes, (4) Working with Bundles, transactions, batch operations, or search pagination. Covers FHIR R4 resource structures, required fields, value sets (status codes, gender, intent), coding systems (LOINC, SNOMED, RxNorm, ICD-10), and OperationOutcome error handling.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-differential-splicing Detects differential alternative splicing between conditions using rMATS-turbo (BAM-based) or SUPPA2 diffSplice (TPM-based). Reports events with FDR-corrected significance and delta PSI effect sizes. Use when comparing splicing patterns between treatment groups, tissues, or disease states.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
using-git-worktrees Use when starting feature work that needs isolation from current workspace or before executing implementation plans - creates isolated git worktrees with smart directory selection and safety verification
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-copy-number-gatk-cnv Call copy number variants using GATK best practices workflow. Supports both somatic (tumor-normal) and germline CNV detection from WGS or WES data. Use when following GATK best practices or integrating CNV calling with other GATK variant pipelines.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-clinical-databases-somatic-signatures Extract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic processes. Use when identifying DNA damage mechanisms or etiology in cancer genomes.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
drug-photo Medication photo to personalised PGx dosage card via Claude vision — snap a pill, get genotype-informed guidance
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-alignment-indexing
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
uniprot-database Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use this for direct HTTP/REST work or UniProt-specific control.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
scanpy Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
wearable-analysis-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
data-viz-plots Create publication-quality plots and visualizations using matplotlib and seaborn. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
wellally-tech Integrate digital health data sources (Apple Health, Fitbit, Oura Ring) and connect to WellAlly.tech knowledge base. Import external health device data, standardize to local format, and recommend relevant WellAlly.tech knowledge base articles based on health data. Support generic CSV/JSON import, provide intelligent article recommendations, and help users better manage personal health data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
phylogenetics Build and analyze phylogenetic trees using MAFFT (multiple alignment), IQ-TREE 2 (maximum likelihood), and FastTree (fast NJ/ML). Visualize with ETE3 or FigTree. For evolutionary analysis, microbial genomics, viral phylodynamics, protein family analysis, and molecular clock studies.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
single-cell-clustering-and-batch-correction-with-omicverse Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in t_cluster.ipynb and t_single_batch.ipynb.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009