Topic: mcp
13,395 skills in this topic.
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scientific-critical-thinking
Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks (GRADE, Cochrane Risk of Bias), or teaching critical analysis. Best for understanding evidence quality, identifying flaws. For formal peer review writing use peer-review.
foryourhealth111-pixel/Vibe-Skills 1,415
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matlab
MATLAB and GNU Octave numerical computing for matrix operations, data analysis, visualization, and scientific computing. Use when writing MATLAB/Octave scripts for linear algebra, signal processing, image processing, differential equations, optimization, statistics, or creating scientific visualizations. Also use when the user needs help with MATLAB syntax, functions, or wants to convert between MATLAB and Python code. Scripts can be executed with MATLAB or the open-source GNU Octave interpreter.
foryourhealth111-pixel/Vibe-Skills 1,415
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manuscript-as-code
Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'final_v7' chaos and ensures submission-ready artifacts.
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-pm
Product Manager (Morgan). Use for PRD creation (greenfield and brownfield), epic creation and management, product strategy and vision, feature prioritization (MoSCoW, RICE), roa...
foryourhealth111-pixel/Vibe-Skills 1,415
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security-threat-model
Repository-grounded threat modeling that enumerates trust boundaries, assets, attacker capabilities, abuse paths, and mitigations, and writes a concise Markdown threat model. Trigger only when the user explicitly asks to threat model a codebase or path, enumerate threats/abuse paths, or perform AppSec threat modeling. Do not trigger for general architecture summaries, code review, or non-security design work.
foryourhealth111-pixel/Vibe-Skills 1,415
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rdkit
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows with simpler interface, use datamol (wrapper around RDKit). Use rdkit for advanced control, custom sanitization, specialized algorithms.
foryourhealth111-pixel/Vibe-Skills 1,415
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xlsx
Spreadsheet toolkit (.xlsx/.csv). Create/edit with formulas/formatting, analyze data, visualization, recalculate formulas, for spreadsheet processing and analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-dev
Full Stack Developer (Dex). Use for code implementation, debugging, refactoring, and development best practices
foryourhealth111-pixel/Vibe-Skills 1,415
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sparse-autoencoder-training
Provides guidance for training and analyzing Sparse Autoencoders (SAEs) using SAELens to decompose neural network activations into interpretable features. Use when discovering interpretable features, analyzing superposition, or studying monosemantic representations in language models.
foryourhealth111-pixel/Vibe-Skills 1,415
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nowait-reasoning-optimizer
Implements the NOWAIT technique for efficient reasoning in R1-style LLMs. Use when optimizing inference of reasoning models (QwQ, DeepSeek-R1, Phi4-Reasoning, Qwen3, Kimi-VL, QvQ), reducing chain-of-thought token usage by 27-51% while preserving accuracy. Triggers on "optimize reasoning", "reduce thinking tokens", "efficient inference", "suppress reflection tokens", or when working with verbose CoT outputs.
foryourhealth111-pixel/Vibe-Skills 1,415
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comprehensive-research-agent
Ensure thorough validation, error recovery, and transparent reasoning in research tasks with multiple tool calls
foryourhealth111-pixel/Vibe-Skills 1,415
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unsloth
Expert guidance for fast fine-tuning with Unsloth - 2-5x faster training, 50-80% less memory, LoRA/QLoRA optimization
foryourhealth111-pixel/Vibe-Skills 1,415
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yeet
Use only when the user explicitly asks to stage, commit, push, and open a GitHub pull request in one flow using the GitHub CLI (`gh`).
foryourhealth111-pixel/Vibe-Skills 1,415
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ralph-loop
Codex-compatible Ralph loop runner with dual engines (compat local state loop + optional open-ralph-wiggum backend).
foryourhealth111-pixel/Vibe-Skills 1,415
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omero-integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
foryourhealth111-pixel/Vibe-Skills 1,415
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scientific-brainstorming
Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving.
foryourhealth111-pixel/Vibe-Skills 1,415
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data-normalization-tool
Data Normalization Tool - Auto-activating skill for ML Training.
Triggers on: data normalization tool, data normalization tool
Part of the ML Training skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
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cellxgene-census
Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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performing-causal-analysis
Fits causal models, estimates impacts, and plots results using CausalPy. Use when performing analysis with DiD, ITS, SC, or RD.
foryourhealth111-pixel/Vibe-Skills 1,415
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ml-pipeline-workflow
Build end-to-end MLOps pipelines from data preparation through model training, validation, and production deployment. Use when creating ML pipelines, implementing MLOps practices, or automating model training and deployment workflows.
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-devops
GitHub Repository Manager & DevOps Specialist (Gage). Use for repository operations, version management, CI/CD, quality gates, and GitHub push operations. ONLY agent authorized...
foryourhealth111-pixel/Vibe-Skills 1,415
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gget
CLI/Python toolkit for rapid bioinformatics queries. Preferred for quick BLAST searches. Access to 20+ databases: gene info (Ensembl/UniProt), AlphaFold, ARCHS4, Enrichr, OpenTargets, COSMIC, genome downloads. For advanced BLAST/batch processing, use biopython. For multi-database integration, use bioservices.
foryourhealth111-pixel/Vibe-Skills 1,415
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pymoo
Multi-objective optimization framework. NSGA-II, NSGA-III, MOEA/D, Pareto fronts, constraint handling, benchmarks (ZDT, DTLZ), for engineering design and optimization problems.
foryourhealth111-pixel/Vibe-Skills 1,415
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coding-tutor
Personalized coding tutorials that build on your existing knowledge and use your actual codebase for examples. Creates a persistent learning trail that compounds over time using the power of AI, spaced repetition and quizes.
foryourhealth111-pixel/Vibe-Skills 1,415