Topic: developer-tools
13,276 skills in this topic.
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reactome-database
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, disease pathways, molecular interactions, expression analysis, for systems biology studies.
foryourhealth111-pixel/Vibe-Skills 1,415
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cancel-ralph
Codex-compatible cancel command for Ralph loop state, preserving the original command name.
foryourhealth111-pixel/Vibe-Skills 1,415
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pymc-bayesian-modeling
Compatibility alias for the descriptive PyMC skill name. Delegate to the canonical local `pymc` payload while preserving route and README compatibility.
foryourhealth111-pixel/Vibe-Skills 1,415
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build-error-resolver
Compatibility alias for build-specific error resolution. Use this when VCO routes to build-error-resolver but the upstream agent is unavailable in the current runtime.
foryourhealth111-pixel/Vibe-Skills 1,415
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scikit-bio
Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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matchms
Spectral similarity and compound identification for metabolomics. Use for comparing mass spectra, computing similarity scores (cosine, modified cosine), and identifying unknown compounds from spectral libraries. Best for metabolite identification, spectral matching, library searching. For full LC-MS/MS proteomics pipelines use pyopenms.
foryourhealth111-pixel/Vibe-Skills 1,415
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transformer-lens-interpretability
Provides guidance for mechanistic interpretability research using TransformerLens to inspect and manipulate transformer internals via HookPoints and activation caching. Use when reverse-engineering model algorithms, studying attention patterns, or performing activation patching experiments.
foryourhealth111-pixel/Vibe-Skills 1,415
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gene-database
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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denario
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.
foryourhealth111-pixel/Vibe-Skills 1,415
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superclaude-framework-compat
Codex compatibility layer for SuperClaude /sc:* commands with vibe-adapted routing.
foryourhealth111-pixel/Vibe-Skills 1,415
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statistics-math
Statistics, probability, linear algebra, and mathematical foundations for data science
foryourhealth111-pixel/Vibe-Skills 1,415
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statsmodels
Statistical modeling toolkit. OLS, GLM, logistic, ARIMA, time series, hypothesis tests, diagnostics, AIC/BIC, for rigorous statistical inference and econometric analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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pufferlib
This skill should be used when working with reinforcement learning tasks including high-performance RL training, custom environment development, vectorized parallel simulation, multi-agent systems, or integration with existing RL environments (Gymnasium, PettingZoo, Atari, Procgen, etc.). Use this skill for implementing PPO training, creating PufferEnv environments, optimizing RL performance, or developing policies with CNNs/LSTMs.
foryourhealth111-pixel/Vibe-Skills 1,415
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zinc-database
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
foryourhealth111-pixel/Vibe-Skills 1,415
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vibe-upgrade
Upgrade the local Vibe-Skills installation to the latest official default-branch state while keeping canonical vibe as the only governed runtime.
foryourhealth111-pixel/Vibe-Skills 1,415
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benchling-integration
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
foryourhealth111-pixel/Vibe-Skills 1,415
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scientific-writing
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
foryourhealth111-pixel/Vibe-Skills 1,415
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networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
foryourhealth111-pixel/Vibe-Skills 1,415
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bgpt-paper-search
Search scientific papers and retrieve structured experimental data extracted from full-text studies via the BGPT MCP server. Returns 25+ fields per paper including methods, results, sample sizes, quality scores, and conclusions. Use for literature reviews, evidence synthesis, and finding experimental details not available in abstracts alone.
foryourhealth111-pixel/Vibe-Skills 1,415
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mathematical-logic-expert
Expert in formal logic, model theory, computability, and foundations of mathematics
foryourhealth111-pixel/Vibe-Skills 1,415
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fred-economic-data
Query FRED (Federal Reserve Economic Data) API for 800,000+ economic time series from 100+ sources. Access GDP, unemployment, inflation, interest rates, exchange rates, housing, and regional data. Use for macroeconomic analysis, financial research, policy studies, economic forecasting, and academic research requiring U.S. and international economic indicators.
foryourhealth111-pixel/Vibe-Skills 1,415
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security-ownership-map
Analyze git repositories to build a security ownership topology (people-to-file), compute bus factor and sensitive-code ownership, and export CSV/JSON for graph databases and visualization. Trigger only when the user explicitly wants a security-oriented ownership or bus-factor analysis grounded in git history (for example: orphaned sensitive code, security maintainers, CODEOWNERS reality checks for risk, sensitive hotspots, or ownership clusters). Do not trigger for general maintainer lists or non-security ownership questions.
foryourhealth111-pixel/Vibe-Skills 1,415
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esm
Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.
foryourhealth111-pixel/Vibe-Skills 1,415
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speckit-specify
Create or update feature specifications from natural language descriptions. Use when starting new features or refining requirements. Generates spec.md with user stories, functional requirements, and acceptance criteria following spec-driven development methodology.
foryourhealth111-pixel/Vibe-Skills 1,415