Topic: developer-tools
13,276 skills in this topic.
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ensembl-database
Query Ensembl genome database REST API for 250+ species. Gene lookups, sequence retrieval, variant analysis, comparative genomics, orthologs, VEP predictions, for genomic research.
foryourhealth111-pixel/Vibe-Skills 1,415
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hmdb-database
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
foryourhealth111-pixel/Vibe-Skills 1,415
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qutip
Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED. Best for physics research, open system dynamics, and educational simulations. NOT for circuit-based quantum computing—use qiskit, cirq, or pennylane for quantum algorithms and hardware execution.
foryourhealth111-pixel/Vibe-Skills 1,415
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security-reviewer
Security review wrapper for vibe review flow. Detects OWASP-style risks, secret leaks, auth flaws, and unsafe input handling.
foryourhealth111-pixel/Vibe-Skills 1,415
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docx
Document toolkit (.docx). Create/edit documents, tracked changes, comments, formatting preservation, text extraction, for professional document processing.
foryourhealth111-pixel/Vibe-Skills 1,415
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propositional-logic
Problem-solving strategies for propositional logic in mathematical logic
foryourhealth111-pixel/Vibe-Skills 1,415
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geopandas
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.
foryourhealth111-pixel/Vibe-Skills 1,415
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cosmic-database
Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
foryourhealth111-pixel/Vibe-Skills 1,415
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kegg-database
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices. Use this for direct HTTP/REST work or KEGG-specific control.
foryourhealth111-pixel/Vibe-Skills 1,415
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metric-calculator
Metric Calculator - Auto-activating skill for Data Analytics.
Triggers on: metric calculator, metric calculator
Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
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protocolsio-integration
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials; handle discussions and comments; organize workspaces; upload and manage files; or integrate protocols.io functionality into workflows. Applicable for protocol discovery, collaborative protocol development, experiment tracking, lab protocol management, and scientific documentation.
foryourhealth111-pixel/Vibe-Skills 1,415
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markdown-mermaid-writing
Comprehensive markdown and Mermaid diagram writing skill that establishes text-based diagrams as the DEFAULT documentation standard. Use this skill when creating ANY scientific document, report, analysis, or visualization — it ensures all outputs are in version-controlled, token-efficient markdown with embedded Mermaid diagrams as the source of truth, with clear pathways to downstream Python or AI-generated images. Includes full style guides (markdown + mermaid), 24 diagram type references, and 9 document templates ready to use.
foryourhealth111-pixel/Vibe-Skills 1,415
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detecting-performance-regressions
Automatically detect performance regressions in CI/CD pipelines by comparing metrics against baselines. Use when validating builds or analyzing performance trends. Trigger with phrases like "detect performance regression", "compare performance metrics", or "analyze performance degradation".
foryourhealth111-pixel/Vibe-Skills 1,415
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diffdock
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
foryourhealth111-pixel/Vibe-Skills 1,415
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scientific-reporting
Write research/technical reports with strong structure + figure standards. Supports Markdown/HTML/PDF outputs (Quarto optional), executive summary, methods, results, discussion, and reproducibility appendix.
foryourhealth111-pixel/Vibe-Skills 1,415
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torchdrug
Graph-based drug discovery toolkit. Molecular property prediction (ADMET), protein modeling, knowledge graph reasoning, molecular generation, retrosynthesis, GNNs (GIN, GAT, SchNet), 40+ datasets, for PyTorch-based ML on molecules, proteins, and biomedical graphs.
foryourhealth111-pixel/Vibe-Skills 1,415
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detecting-data-anomalies
Process identify anomalies and outliers in datasets using machine learning algorithms.
Use when analyzing data for unusual patterns, outliers, or unexpected deviations from normal behavior.
Trigger with phrases like "detect anomalies", "find outliers", or "identify unusual patterns".
foryourhealth111-pixel/Vibe-Skills 1,415
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code-review-excellence
Master effective code review practices to provide constructive feedback, catch bugs early, and foster knowledge sharing while maintaining team morale. Use when reviewing pull requests, establishing review standards, or mentoring developers.
foryourhealth111-pixel/Vibe-Skills 1,415
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docx-comment-reply
Reply to comments (批注) in Word .docx/.doc files: extract comment context, draft replies, write threaded replies back, and validate OOXML.
foryourhealth111-pixel/Vibe-Skills 1,415
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data-exploration-visualization
自动化数据探索和可视化工具，提供从数据加载到专业报告生成的完整EDA解决方案。支持多种图表类型、智能数据诊断、建模评估和HTML报告生成。适用于医疗、金融、电商等领域的数据分析项目。
foryourhealth111-pixel/Vibe-Skills 1,415
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datavis
Comprehensive data visualization toolkit for creating beautiful, mathematically elegant visualizations with D3.js, Chart.js, and custom SVG. Use when (1) building interactive data visualizations, (2) designing color palettes for charts, (3) choosing scales and visual encodings, (4) creating data pipelines from Census/SEC/Wikipedia APIs, (5) crafting narrative-driven data stories, (6) making perceptually accurate charts, or (7) implementing force-directed networks, timelines, or geographic maps.
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-sm
Scrum Master (River). Use for user story creation from PRD, story validation and completeness checking, acceptance criteria definition, story refinement, sprint planning, backlo...
foryourhealth111-pixel/Vibe-Skills 1,415
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bioservices
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
foryourhealth111-pixel/Vibe-Skills 1,415
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deslop
Remove AI-generated code slop from a branch. Use when cleaning up AI-generated code, removing unnecessary comments, defensive checks, or type casts. Checks diff against main and fixes style inconsistencies.
foryourhealth111-pixel/Vibe-Skills 1,415