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Topic: codex

8,457 skills in this topic.

anomaly-detector Anomaly Detector - Auto-activating skill for Data Analytics. Triggers on: anomaly detector, anomaly detector Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
architecture-patterns Implement proven backend architecture patterns including Clean Architecture, Hexagonal Architecture, and Domain-Driven Design. Use when architecting complex backend systems or refactoring existing applications for better maintainability.
foryourhealth111-pixel/Vibe-Skills 1,415
paper-2-web This skill should be used when converting academic papers into promotional and presentation formats including interactive websites (Paper2Web), presentation videos (Paper2Video), and conference posters (Paper2Poster). Use this skill for tasks involving paper dissemination, conference preparation, creating explorable academic homepages, generating video abstracts, or producing print-ready posters from LaTeX or PDF sources.
foryourhealth111-pixel/Vibe-Skills 1,415
geo-database Access NCBI GEO for gene expression/genomics data. Search/download microarray and RNA-seq datasets (GSE, GSM, GPL), retrieve SOFT/Matrix files, for transcriptomics and expression analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
autonomous-builder Full-stack autonomous software development agent: handles design, implementation, testing, and deployment end-to-end. Auto-activates for project creation, feature development, bug fixing, code refactoring, or when user requests 'build', 'create', 'implement', 'develop', 'fix', or 'refactor' any software project.
foryourhealth111-pixel/Vibe-Skills 1,415
pdb-database Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
foryourhealth111-pixel/Vibe-Skills 1,415
pdf Use when tasks involve reading, creating, or reviewing PDF files where rendering and layout matter; prefer visual checks by rendering pages (Poppler) and use Python tools such as `reportlab`, `pdfplumber`, and `pypdf` for generation and extraction.
foryourhealth111-pixel/Vibe-Skills 1,415
peer-review Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedback. Best for actual review writing, manuscript revision. For evaluating claims/evidence quality use scientific-critical-thinking; for quantitative scoring frameworks use scholar-evaluation.
foryourhealth111-pixel/Vibe-Skills 1,415
bioservices Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
foryourhealth111-pixel/Vibe-Skills 1,415
aios-qa Test Architect & Quality Advisor (Quinn). Use for comprehensive test architecture review, quality gate decisions, and code improvement. Provides thorough analysis including requ...
foryourhealth111-pixel/Vibe-Skills 1,415
aios-sm Scrum Master (River). Use for user story creation from PRD, story validation and completeness checking, acceptance criteria definition, story refinement, sprint planning, backlo...
foryourhealth111-pixel/Vibe-Skills 1,415
doc Use when the task involves reading, creating, or editing `.docx` documents, especially when formatting or layout fidelity matters; prefer `python-docx` plus the bundled `scripts/render_docx.py` for visual checks.
foryourhealth111-pixel/Vibe-Skills 1,415
docs-review Review documentation changes for compliance with the Metabase writing style guide. Use when reviewing pull requests, files, or diffs containing documentation markdown files.
foryourhealth111-pixel/Vibe-Skills 1,415
docs-write Write documentation following Metabase's conversational, clear, and user-focused style. Use when creating or editing documentation files (markdown, MDX, etc.).
foryourhealth111-pixel/Vibe-Skills 1,415
datavis Comprehensive data visualization toolkit for creating beautiful, mathematically elegant visualizations with D3.js, Chart.js, and custom SVG. Use when (1) building interactive data visualizations, (2) designing color palettes for charts, (3) choosing scales and visual encodings, (4) creating data pipelines from Census/SEC/Wikipedia APIs, (5) crafting narrative-driven data stories, (6) making perceptually accurate charts, or (7) implementing force-directed networks, timelines, or geographic maps.
foryourhealth111-pixel/Vibe-Skills 1,415
debugging-strategies Master systematic debugging techniques, profiling tools, and root cause analysis to efficiently track down bugs across any codebase or technology stack. Use when investigating bugs, performance issues, or unexpected behavior.
foryourhealth111-pixel/Vibe-Skills 1,415
datacommons-client Work with Data Commons, a platform providing programmatic access to public statistical data from global sources. Use this skill when working with demographic data, economic indicators, health statistics, environmental data, or any public datasets available through Data Commons. Applicable for querying population statistics, GDP figures, unemployment rates, disease prevalence, geographic entity resolution, and exploring relationships between statistical entities.
foryourhealth111-pixel/Vibe-Skills 1,415
designing-experiments Selects the appropriate quasi-experimental method (DiD, ITS, SC) based on data structure and research questions. Use when the user is unsure which method to apply.
foryourhealth111-pixel/Vibe-Skills 1,415
ginkgo-cloud-lab Submit and manage protocols on Ginkgo Bioworks Cloud Lab (cloud.ginkgo.bio), a web-based interface for autonomous lab execution on Reconfigurable Automation Carts (RACs). Use when the user wants to run cell-free protein expression (validation or optimization), generate fluorescent pixel art, or interact with Ginkgo Cloud Lab services. Covers protocol selection, input preparation, pricing, and ordering workflows.
foryourhealth111-pixel/Vibe-Skills 1,415
gh-fix-ci Use when a user asks to debug or fix failing GitHub PR checks that run in GitHub Actions; use `gh` to inspect checks and logs, summarize failure context, draft a fix plan, and implement only after explicit approval. Treat external providers (for example Buildkite) as out of scope and report only the details URL.
foryourhealth111-pixel/Vibe-Skills 1,415
cellxgene-census Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
polars Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ETL pipelines, faster pandas replacement. For larger-than-RAM data use dask or vaex.
foryourhealth111-pixel/Vibe-Skills 1,415
code-review Code review assistance with linting, style checking, and best practices
foryourhealth111-pixel/Vibe-Skills 1,415
brenda-database Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
foryourhealth111-pixel/Vibe-Skills 1,415