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Topic: codex

8,457 skills in this topic.

cellxgene-census Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
cirq Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use qiskit; for quantum ML with autodiff use pennylane; for physics simulations use qutip.
foryourhealth111-pixel/Vibe-Skills 1,415
clinical-decision-support Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
foryourhealth111-pixel/Vibe-Skills 1,415
clinical-reports Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.
foryourhealth111-pixel/Vibe-Skills 1,415
algorithmic-art Creating algorithmic art using p5.js with seeded randomness and interactive parameter exploration. Use this when users request creating art using code, generative art, algorithmic art, flow fields, or particle systems. Create original algorithmic art rather than copying existing artists' work to avoid copyright violations.
foryourhealth111-pixel/Vibe-Skills 1,415
brenda-database Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
aios-ux-design-expert UX/UI Designer & Design System Architect (Uma). Complete design workflow - user research, wireframes, design systems, token extraction, component building, and quality assurance
foryourhealth111-pixel/Vibe-Skills 1,415
aios-qa Test Architect & Quality Advisor (Quinn). Use for comprehensive test architecture review, quality gate decisions, and code improvement. Provides thorough analysis including requ...
foryourhealth111-pixel/Vibe-Skills 1,415
anomaly-detector Anomaly Detector - Auto-activating skill for Data Analytics. Triggers on: anomaly detector, anomaly detector Part of the Data Analytics skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
architecture-patterns Implement proven backend architecture patterns including Clean Architecture, Hexagonal Architecture, and Domain-Driven Design. Use when architecting complex backend systems or refactoring existing applications for better maintainability.
foryourhealth111-pixel/Vibe-Skills 1,415
aios-pm Product Manager (Morgan). Use for PRD creation (greenfield and brownfield), epic creation and management, product strategy and vision, feature prioritization (MoSCoW, RICE), roa...
foryourhealth111-pixel/Vibe-Skills 1,415
aios-dev Full Stack Developer (Dex). Use for code implementation, debugging, refactoring, and development best practices
foryourhealth111-pixel/Vibe-Skills 1,415
aios-devops GitHub Repository Manager & DevOps Specialist (Gage). Use for repository operations, version management, CI/CD, quality gates, and GitHub push operations. ONLY agent authorized...
foryourhealth111-pixel/Vibe-Skills 1,415
coding-tutor Personalized coding tutorials that build on your existing knowledge and use your actual codebase for examples. Creates a persistent learning trail that compounds over time using the power of AI, spaced repetition and quizes.
foryourhealth111-pixel/Vibe-Skills 1,415
clinvar-database Query NCBI ClinVar for variant clinical significance. Search by gene/position, interpret pathogenicity classifications, access via E-utilities API or FTP, annotate VCFs, for genomic medicine.
foryourhealth111-pixel/Vibe-Skills 1,415
comprehensive-research-agent Ensure thorough validation, error recovery, and transparent reasoning in research tasks with multiple tool calls
foryourhealth111-pixel/Vibe-Skills 1,415
bioservices Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
foryourhealth111-pixel/Vibe-Skills 1,415
autonomous-builder Full-stack autonomous software development agent: handles design, implementation, testing, and deployment end-to-end. Auto-activates for project creation, feature development, bug fixing, code refactoring, or when user requests 'build', 'create', 'implement', 'develop', 'fix', or 'refactor' any software project.
foryourhealth111-pixel/Vibe-Skills 1,415
skill-creator Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations.
foryourhealth111-pixel/Vibe-Skills 1,415
skill-installer Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos).
foryourhealth111-pixel/Vibe-Skills 1,415
aios-sm Scrum Master (River). Use for user story creation from PRD, story validation and completeness checking, acceptance criteria definition, story refinement, sprint planning, backlo...
foryourhealth111-pixel/Vibe-Skills 1,415
biopython Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
foryourhealth111-pixel/Vibe-Skills 1,415
anndata This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.
foryourhealth111-pixel/Vibe-Skills 1,415
code-review Code review assistance with linting, style checking, and best practices
foryourhealth111-pixel/Vibe-Skills 1,415