Topic: codex
8,457 skills in this topic.
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ml-pipeline-workflow
Build end-to-end MLOps pipelines from data preparation through model training, validation, and production deployment. Use when creating ML pipelines, implementing MLOps practices, or automating model training and deployment workflows.
foryourhealth111-pixel/Vibe-Skills 1,415
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clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
foryourhealth111-pixel/Vibe-Skills 1,415
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clinical-reports
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.
foryourhealth111-pixel/Vibe-Skills 1,415
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data-normalization-tool
Data Normalization Tool - Auto-activating skill for ML Training.
Triggers on: data normalization tool, data normalization tool
Part of the ML Training skill category.
foryourhealth111-pixel/Vibe-Skills 1,415
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autonomous-builder
Full-stack autonomous software development agent: handles design, implementation, testing, and deployment end-to-end. Auto-activates for project creation, feature development, bug fixing, code refactoring, or when user requests 'build', 'create', 'implement', 'develop', 'fix', or 'refactor' any software project.
foryourhealth111-pixel/Vibe-Skills 1,415
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brenda-database
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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skill-creator
Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations.
foryourhealth111-pixel/Vibe-Skills 1,415
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lamindb
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
foryourhealth111-pixel/Vibe-Skills 1,415
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sparse-autoencoder-training
Provides guidance for training and analyzing Sparse Autoencoders (SAEs) using SAELens to decompose neural network activations into interpretable features. Use when discovering interpretable features, analyzing superposition, or studying monosemantic representations in language models.
foryourhealth111-pixel/Vibe-Skills 1,415
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yeet
Use only when the user explicitly asks to stage, commit, push, and open a GitHub pull request in one flow using the GitHub CLI (`gh`).
foryourhealth111-pixel/Vibe-Skills 1,415
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algorithmic-art
Creating algorithmic art using p5.js with seeded randomness and interactive parameter exploration. Use this when users request creating art using code, generative art, algorithmic art, flow fields, or particle systems. Create original algorithmic art rather than copying existing artists' work to avoid copyright violations.
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-ux-design-expert
UX/UI Designer & Design System Architect (Uma). Complete design workflow - user research, wireframes, design systems, token extraction, component building, and quality assurance
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-dev
Full Stack Developer (Dex). Use for code implementation, debugging, refactoring, and development best practices
foryourhealth111-pixel/Vibe-Skills 1,415
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vscode-release-notes-writer
Guidelines for writing and reviewing Insiders and Stable release notes for Visual Studio Code.
foryourhealth111-pixel/Vibe-Skills 1,415
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scientific-brainstorming
Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving.
foryourhealth111-pixel/Vibe-Skills 1,415
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manuscript-as-code
Treat manuscripts as software: version control, reproducible builds, figure pipelines, CI, and structured repo layout. Helps teams avoid 'final_v7' chaos and ensures submission-ready artifacts.
foryourhealth111-pixel/Vibe-Skills 1,415
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research-grants
Write competitive research proposals for NSF, NIH, DOE, DARPA, and Taiwan NSTC. Agency-specific formatting, review criteria, budget preparation, broader impacts, significance statements, innovation narratives, and compliance with submission requirements.
foryourhealth111-pixel/Vibe-Skills 1,415
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performing-causal-analysis
Fits causal models, estimates impacts, and plots results using CausalPy. Use when performing analysis with DiD, ITS, SC, or RD.
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-devops
GitHub Repository Manager & DevOps Specialist (Gage). Use for repository operations, version management, CI/CD, quality gates, and GitHub push operations. ONLY agent authorized...
foryourhealth111-pixel/Vibe-Skills 1,415
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verification-before-completion
Use when about to claim work is complete, fixed, or passing, before committing or creating PRs - requires running verification commands and confirming output before making any success claims; evidence before assertions always
foryourhealth111-pixel/Vibe-Skills 1,415
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coding-tutor
Personalized coding tutorials that build on your existing knowledge and use your actual codebase for examples. Creates a persistent learning trail that compounds over time using the power of AI, spaced repetition and quizes.
foryourhealth111-pixel/Vibe-Skills 1,415
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torch-geometric
Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, molecular property prediction, for geometric deep learning.
foryourhealth111-pixel/Vibe-Skills 1,415
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preprocessing-data-with-automated-pipelines
Process automate data cleaning, transformation, and validation for ML tasks. Use when requesting "preprocess data", "clean data", "ETL pipeline", or "data transformation". Trigger with relevant phrases based on skill purpose.
foryourhealth111-pixel/Vibe-Skills 1,415
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systematic-debugging
Use when encountering any bug, test failure, or unexpected behavior, before proposing fixes
foryourhealth111-pixel/Vibe-Skills 1,415