Topic: codex
8,457 skills in this topic.
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ena-database
Access European Nucleotide Archive via API/FTP. Retrieve DNA/RNA sequences, raw reads (FASTQ), genome assemblies by accession, for genomics and bioinformatics pipelines. Supports multiple formats.
x-cmd/skill 19
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pubmed-database
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
x-cmd/skill 19
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pydeseq2
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
x-cmd/skill 19
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drugbank-database
Access and analyze comprehensive drug information from the DrugBank database including drug properties, interactions, targets, pathways, chemical structures, and pharmacology data. This skill should be used when working with pharmaceutical data, drug discovery research, pharmacology studies, drug-drug interaction analysis, target identification, chemical similarity searches, ADMET predictions, or any task requiring detailed drug and drug target information from DrugBank.
x-cmd/skill 19
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lamindb
This skill should be used when working with LaminDB, an open-source data framework for biology that makes data queryable, traceable, reproducible, and FAIR. Use when managing biological datasets (scRNA-seq, spatial, flow cytometry, etc.), tracking computational workflows, curating and validating data with biological ontologies, building data lakehouses, or ensuring data lineage and reproducibility in biological research. Covers data management, annotation, ontologies (genes, cell types, diseases, tissues), schema validation, integrations with workflow managers (Nextflow, Snakemake) and MLOps platforms (W&B, MLflow), and deployment strategies.
x-cmd/skill 19
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zinc-database
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
x-cmd/skill 19
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scientific-visualization
Meta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel layouts, significance annotations, error bars, colorblind-safe palettes, and specific journal formatting (Nature, Science, Cell). Orchestrates matplotlib/seaborn/plotly with publication styles. For quick exploration use seaborn or plotly directly.
x-cmd/skill 19
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peer-review
Structured manuscript/grant review with checklist-based evaluation. Use when writing formal peer reviews with specific criteria methodology assessment, statistical validity, reporting standards compliance (CONSORT/STROBE), and constructive feedback. Best for actual review writing, manuscript revision. For evaluating claims/evidence quality use scientific-critical-thinking; for quantitative scoring frameworks use scholar-evaluation.
x-cmd/skill 19
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ralph2ralph
P2P chat between Claude Code instances using real-a2a. Use when chatting with other Claudes, joining a P2P room, or communicating agent-to-agent.
eqtylab/real-a2a 27
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ralph2ralph
P2P chat between Claude Code instances using real-a2a. Use when chatting with other Claudes, joining a P2P room, or communicating agent-to-agent.
eqtylab/real-a2a 27
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ralph2ralph
P2P chat between Claude Code instances using real-a2a. Use when chatting with other Claudes, joining a P2P room, or communicating agent-to-agent.
eqtylab/real-a2a 27
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size-check
代码简化与文件行数检查。当用户描述"简化代码"、"检查文件大小"、"代码瘦身"时触发。 审查变更代码的复用性、质量和效率；扫描项目文件行数是否超限并给出拆分建议。
doccker/cc-use-exp 424
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commit-msg
结构化 git commit message 生成工作流，适用于显式 commit message、提交说明或 commit-msg 场景；不负责实际执行 git commit。
doccker/cc-use-exp 424
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ruanzhu
当用户执行 /ruanzhu 命令或请求生成软著源代码文档时触发。提供软著源代码 DOCX 生成规范。 覆盖项目信息检测、语言扫描规则、页数控制、DOCX 格式规范等。
doccker/cc-use-exp 424
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cc-bash-style
Bash、Shell、Dockerfile、Makefile 与命令片段规范，适用于脚本修改、命令编写和文档中的 shell 示例；不负责运维审批策略。
doccker/cc-use-exp 424
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bash-style
Bash 编写规范。当用户操作 .sh、Dockerfile、Makefile、.yml、.yaml 文件， 或在 Markdown 中编写 bash/shell 代码块时触发。 包含注释规范、文件写入方式、Heredoc 引号规则、权限路径、脚本规范等。
doccker/cc-use-exp 424
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cc-status
结构化 Codex 配置状态检查工作流，适用于显式 status、配置诊断或同步结果核对场景；聚焦 Codex 配置，不复刻 Claude 的命令和 LSP 状态。
doccker/cc-use-exp 424
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optimize
结构化系统优化扫描工作流，适用于显式 optimize、性能评估、体验评估或代码质量扫描场景；默认输出问题与建议，不直接改代码。
doccker/cc-use-exp 424
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cc-ops-safety
Shell、服务、容器、数据库、部署或环境敏感操作的安全规范，适用于风险说明、回滚思路和影响面控制；不负责语言细节。
doccker/cc-use-exp 424
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python-dev
Python 开发规范，包含 PEP 8 风格、类型注解、异步编程、性能优化等。当操作 .py, pyproject.toml, requirements.txt 文件时自动激活。
doccker/cc-use-exp 424
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new-feature
结构化新功能交付工作流，适用于显式 new feature、从需求到实现的一站式功能开发或恢复未完成任务场景；通过项目内 .codex/tasks/ 持久化状态。
doccker/cc-use-exp 424
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ops-safety
当用户执行系统级命令（sysctl、iptables、systemctl、Docker 配置、数据库 DDL）或进行服务器运维操作时触发。提供运维安全规范。
doccker/cc-use-exp 424
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java-dev
Java 开发规范，包含命名约定、异常处理、Spring Boot 最佳实践等
doccker/cc-use-exp 424
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go-dev
Go 开发规范，包含命名约定、错误处理、并发编程、测试规范等
doccker/cc-use-exp 424