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Agent skills
codex-skills

Topic: codex-skills

9,266 skills in this topic.

pubmed-database Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work or custom API implementations.
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system-design Use when designing, architecting, or planning a new system from requirements or ideas - transforms concepts into navigable design catalog using EventStorming methodology, Mermaid diagrams, and progressive elaboration through 5 phases (Requirements, Big Picture, Processes, Data/Flows, Integration)
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tavily-search-free Use Tavily Search API for optimized, real-time web search results for RAG. A pre-configured, cost-effective search tool.
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tmux Remote control tmux sessions for interactive CLIs, background tasks, and services. Supports sub-tasks, long-running processes, and service management with session persistence and automatic cleanup.
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web-browser Allows to interact with web pages by performing actions such as clicking buttons, filling out forms, and navigating links. It works by remote controlling Google Chrome or Chromium browsers using the Chrome DevTools Protocol (CDP). When Claude needs to browse the web, it can use this skill to do so.
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ai-runtime-memory AI Runtime分层记忆系统，支持SQL风格的事件查询、时间线管理，以及记忆的智能固化和检索，用于项目历史追踪和经验传承
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exa 使用 Exa.ai API 进行高质量的互联网搜索。需要 EXA_API_KEY 环境变量。
aiskillstore/marketplace 232
svg-logo-generator Generate high-quality, minimalistic, and geometric SVG logos using Python scripts. Use this skill when users need to create logos, icons, or visual identities with geometric primitives (circles, rects, paths) and specific color schemes. Applies generative design principles with standardized workflows for scalable SVG output.
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ai-runtime-toolkit AI Runtime工具装备系统，支持8个内部专业工具和10+个外部CLI工具的整合管理，提供工具发现、执行和配置功能，遵循整合优于创造的设计理念
aiskillstore/marketplace 232
pufferlib This skill should be used when working with reinforcement learning tasks including high-performance RL training, custom environment development, vectorized parallel simulation, multi-agent systems, or integration with existing RL environments (Gymnasium, PettingZoo, Atari, Procgen, etc.). Use this skill for implementing PPO training, creating PufferEnv environments, optimizing RL performance, or developing policies with CNNs/LSTMs.
aiskillstore/marketplace 232
ast-grep 语法感知的代码搜索、linting 和重写工具。支持基于 AST 的结构化代码搜索和批量代码转换。
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workhub 工作文档枢纽，强制执行 SSOT（Single Source of Truth）原则，管理 `docs/` 目录下的架构决策、设计文档、Issues（任务规划）、PRs（变更记录）。支持 GitHub 协作开发模式。
aiskillstore/marketplace 232
geniml This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
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knowledge-base 专业的知识库管理系统，旨在解决“知识诅咒”和认知偏差问题。通过显式化隐性知识、扫描代码提取领域概念、整合行业最佳实践，构建结构化的 Markdown 知识库。
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pennylane Cross-platform Python library for quantum computing, quantum machine learning, and quantum chemistry. Enables building and training quantum circuits with automatic differentiation, seamless integration with PyTorch/JAX/TensorFlow, and device-independent execution across simulators and quantum hardware (IBM, Amazon Braket, Google, Rigetti, IonQ, etc.). Use when working with quantum circuits, variational quantum algorithms (VQE, QAOA), quantum neural networks, hybrid quantum-classical models, molecular simulations, quantum chemistry calculations, or any quantum computing tasks requiring gradient-based optimization, hardware-agnostic programming, or quantum machine learning workflows.
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improve-skill Analyze coding agent session transcripts to improve existing skills or create new ones. Use when asked to improve a skill based on a session, or extract a new skill from session history.
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exploratory-data-analysis Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
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file-organizer Intelligently organizes your files and folders across your computer by understanding context, finding duplicates, suggesting better structures, and automating cleanup tasks. Reduces cognitive load and keeps your digital workspace tidy without manual effort.
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fluidsim Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
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codeconscious-identity CodeConscious认知主体性AI助手的核心身份定义和操作命令系统，提供/runtime.*系列命令用于探索、学习、思考、规划和执行，支持宪法治理和记忆管理
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pathml Computational pathology toolkit for analyzing whole-slide images (WSI) and multiparametric imaging data. Use this skill when working with histopathology slides, H&E stained images, multiplex immunofluorescence (CODEX, Vectra), spatial proteomics, nucleus detection/segmentation, tissue graph construction, or training ML models on pathology data. Supports 160+ slide formats including Aperio SVS, NDPI, DICOM, OME-TIFF for digital pathology workflows.
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doc-coauthoring Guide users through a structured workflow for co-authoring documentation. Use when user wants to write documentation, proposals, technical specs, decision docs, or similar structured content. This workflow helps users efficiently transfer context, refine content through iteration, and verify the doc works for readers. Trigger when user mentions writing docs, creating proposals, drafting specs, or similar documentation tasks.
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project-planner Comprehensive project planning and documentation generator for software projects. Creates structured requirements documents, system design documents, and task breakdown plans with implementation tracking. Use when starting a new project, defining specifications, creating technical designs, or breaking down complex systems into implementable tasks. Supports user story format, acceptance criteria, component design, API specifications, and hierarchical task decomposition with requirement traceability.
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context7 Search GitHub issues, pull requests, and discussions across any repository. Activates when researching external dependencies (whisper.cpp, NAudio), looking for similar bugs, or finding implementation examples.
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