Topic: claude-code
35,830 skills in this topic.
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bio-longitudinal-monitoring
Tracks ctDNA dynamics over time for treatment response monitoring using serial liquid biopsy samples. Analyzes tumor fraction trends, mutation clearance kinetics, and defines molecular response criteria. Use when monitoring patients during therapy or detecting molecular relapse before clinical progression.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-multi-omics-similarity-network
Similarity Network Fusion (SNF) for patient stratification using multi-omics data. Integrates multiple data types into a unified patient similarity network. Use when performing patient stratification or integrating multi-omics data into unified similarity networks.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-reporting-figure-export
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-causal-genomics-colocalization-analysis
Test whether two traits share a causal variant at a genomic locus using Bayesian colocalization with coloc. Computes posterior probabilities for shared vs distinct causal variants between GWAS and eQTL signals. Use when determining if a GWAS signal and an eQTL share the same causal variant.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-experimental-design-batch-design
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-systems-biology-model-curation
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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geopandas
Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transformations, spatial joins, overlay operations, choropleth mapping, or any task involving reading/writing/analyzing vector geographic data. Supports PostGIS databases, interactive maps, and integration with matplotlib/folium/cartopy. Use for tasks like buffer analysis, spatial joins between datasets, dissolving boundaries, clipping data, calculating areas/distances, reprojecting coordinate systems, creating maps, or converting between spatial file formats.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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diffdock
Diffusion-based molecular docking. Predict protein-ligand binding poses from PDB/SMILES, confidence scores, virtual screening, for structure-based drug design. Not for affinity prediction.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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mcpmed-bioinformatics-server
Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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differentiation-schemes
Select and apply numerical differentiation schemes for PDE/ODE discretization. Use when choosing finite difference/volume/spectral schemes, building stencils, handling boundaries, estimating truncation error, or analyzing dispersion and dissipation.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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openalex-database
Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking citations, discovering open access publications, or conducting bibliometric analysis across 240M+ scholarly works. Use for literature searches, research output analysis, citation analysis, and academic database queries.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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recovery-community-moderator
Trauma-informed AI moderator for addiction recovery communities. Applies harm reduction principles, honors 12-step traditions, distinguishes healthy conflict from abuse, detects crisis posts. Activate on 'community moderation', 'moderate forum', 'review post', 'check content', 'crisis detection'. NOT for legal documents (use recovery-app-legal-terms), app development (use domain skills), or therapy (use jungian-psychologist).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-research-tools-biomarker-signature-studio
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-epidemiological-genomics-variant-surveillance
Assign pathogen lineages and track variants using Nextclade and pangolin for viral surveillance. Monitor variant prevalence and identify emerging variants of concern. Use when classifying viral sequences, tracking lineage dynamics, or monitoring for variants of concern.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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markdown-mermaid-writing
Comprehensive markdown and Mermaid diagram writing skill. Use when creating any scientific document, report, analysis, or visualization. Establishes text-based diagrams as the default documentation standard with full style guides (markdown + mermaid), 24 diagram type references, and 9 document templates.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-structural-biology-alphafold-predictions
Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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markitdown
Convert files and office documents to Markdown. Supports PDF, DOCX, PPTX, XLSX, images (with OCR), audio (with transcription), HTML, CSV, JSON, XML, ZIP, YouTube URLs, EPubs and more.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-copy-number-cnv-annotation
Annotate CNVs with genes, pathways, and clinical significance. Use when interpreting CNV calls or identifying affected genes from copy number analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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clinical-note-summarization
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bio-clip-seq-clip-preprocessing
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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bioservices
Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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nicheformer-spatial-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
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protac-design-agent
FreedomIntelligence/OpenClaw-Medical-Skills 2,009