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Agent skills
claude-code

Topic: claude-code

35,830 skills in this topic.

bio-longread-medaka Polish assemblies and call variants from Oxford Nanopore data using medaka. Uses neural networks trained on specific basecaller versions. Use when improving ONT-only assemblies or calling variants from Nanopore data without short-read polishing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-genome-assembly-scaffolding
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-systems-biology-metabolic-reconstruction
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-imaging-mass-cytometry-cell-segmentation Cell segmentation from multiplexed tissue images. Covers deep learning (Cellpose, Mesmer) and classical approaches for nuclear and whole-cell segmentation. Use when extracting single-cell data from IMC or MIBI images after preprocessing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-metabolomics-msdial-preprocessing MS-DIAL-based metabolomics preprocessing as alternative to XCMS. Covers peak detection, alignment, annotation, and export for downstream analysis. Use when processing MS-DIAL output files for R/Python analysis or when preferring GUI-based preprocessing.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-longread-qc Quality control for long-read sequencing data using NanoPlot, NanoStat, and chopper. Generate QC reports, filter reads by length and quality, and visualize read characteristics. Use when assessing ONT or PacBio run quality or filtering reads before assembly or alignment.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-spatial-transcriptomics-spatial-deconvolution Estimate cell type composition in spatial transcriptomics spots using reference-based deconvolution. Use cell2location, RCTD, SPOTlight, or Tangram to infer cell type proportions from scRNA-seq references. Use when estimating cell type composition in spatial spots.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-data-visualization-interactive-visualization
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
hrv-alexithymia-expert Heart rate variability biometrics and emotional awareness training. Expert in HRV analysis, interoception training, biofeedback, and emotional intelligence. Activate on 'HRV', 'heart rate variability', 'alexithymia', 'biofeedback', 'vagal tone', 'interoception', 'RMSSD', 'autonomic nervous system'. NOT for general fitness tracking without HRV focus, simple heart rate monitoring, or diagnosing medical conditions (only licensed professionals diagnose).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
doc-coauthoring Guide users through a structured workflow for co-authoring documentation. Use when user wants to write documentation, proposals, technical specs, decision docs, or similar structured content. This workflow helps users efficiently transfer context, refine content through iteration, and verify the doc works for readers. Trigger when user mentions writing docs, creating proposals, drafting specs, or similar documentation tasks.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-proteomics-differential-abundance Statistical testing for differentially abundant proteins between conditions. Covers limma and MSstats workflows with multiple testing correction. Use when identifying proteins with significant abundance changes between experimental groups.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
hipaa-compliance Ensure HIPAA compliance when handling PHI (Protected Health Information). Use when writing code that accesses user health data, check-ins, journal entries, or any sensitive information. Activates for audit logging, data access, security events, and compliance questions.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-population-genetics-selection-statistics
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-methylation-based-detection Analyzes cfDNA methylation patterns for cancer detection using cfMeDIP-seq or bisulfite sequencing with MethylDackel. Identifies cancer-specific methylation signatures and performs tissue-of-origin deconvolution. Use when using methylation biomarkers for early cancer detection or minimal residual disease.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
biologist-analyst Analyzes living systems and biological phenomena through biological lens using evolution, molecular biology, ecology, and systems biology frameworks. Provides insights on mechanisms, adaptations, interactions, and life processes. Use when: Biological systems, health issues, evolutionary questions, ecological problems, biotechnology. Evaluates: Function, structure, heredity, evolution, interactions, molecular mechanisms.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-proteomics-quantification Protein quantification from mass spectrometry data including label-free (LFQ, intensity-based), isobaric labeling (TMT, iTRAQ), and metabolic labeling (SILAC) approaches. Use when extracting protein abundances from MS data for differential analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-long-read-sequencing-isoseq-analysis Analyze PacBio Iso-Seq data for full-length isoform discovery and quantification. Use when characterizing transcript diversity or identifying novel splice variants.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-duplicate-handling
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-variant-normalization Normalize indel representation and split multiallelic variants using bcftools norm. Use when comparing variants from different callers or preparing VCF for downstream analysis.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-single-cell-scatac-analysis Single-cell ATAC-seq analysis with Signac (R/Seurat) and ArchR. Process 10X Genomics scATAC data, perform QC, dimensionality reduction, clustering, peak calling, and motif activity scoring with chromVAR. Use when analyzing single-cell ATAC-seq data.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
data-stats-analysis Perform statistical tests, hypothesis testing, correlation analysis, and multiple testing corrections using scipy and statsmodels. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
arxiv-search Search arXiv physics, math, and computer science preprints using natural language queries. Powered by Valyu semantic search.
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-workflows-gwas-pipeline
FreedomIntelligence/OpenClaw-Medical-Skills 2,009
bio-read-alignment-bwa-alignment
FreedomIntelligence/OpenClaw-Medical-Skills 2,009