Topic: automation
6,910 skills in this topic.
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slides-as-code
Build research slides with text-first source (Slidev/Marp/Reveal/Quarto) and reproducible export (PDF). Includes structure, figure reuse rules, and quality checklist for top-tier scientific presentations.
foryourhealth111-pixel/Vibe-Skills 1,415
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fluidsim
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when analyzing turbulence, vortex dynamics, or geophysical flows. Provides pseudospectral methods with FFT, HPC support, and comprehensive output analysis.
foryourhealth111-pixel/Vibe-Skills 1,415
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senior-prompt-engineer
World-class prompt engineering skill for LLM optimization, prompt patterns, structured outputs, and AI product development. Expertise in Claude, GPT-4, prompt design patterns, few-shot learning, chain-of-thought, and AI evaluation. Includes RAG optimization, agent design, and LLM system architecture. Use when building AI products, optimizing LLM performance, designing agentic systems, or implementing advanced prompting techniques.
foryourhealth111-pixel/Vibe-Skills 1,415
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hypothesis-testing
Property-based testing with Hypothesis for discovering edge cases and validating invariants.
Use when implementing comprehensive test coverage, testing complex logic with many inputs,
or validating mathematical properties and invariants across input domains.
Triggered by: hypothesis, property-based testing, @given, strategies, generative testing.
foryourhealth111-pixel/Vibe-Skills 1,415
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vibe-what-do-i-want
Clarify intent and freeze requirements by entering the canonical vibe runtime with a discovery-first bounded stop.
foryourhealth111-pixel/Vibe-Skills 1,415
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scientific-visualization
Create publication figures with matplotlib/seaborn/plotly. Multi-panel layouts, error bars, significance markers, colorblind-safe, export PDF/EPS/TIFF, for journal-ready scientific plots.
foryourhealth111-pixel/Vibe-Skills 1,415
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arboreto
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
foryourhealth111-pixel/Vibe-Skills 1,415
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context-hunter
Discover codebase patterns, conventions, and unwritten rules before making changes. Use when implementing features, fixing bugs, or refactoring code.
foryourhealth111-pixel/Vibe-Skills 1,415
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metabolomics-workbench-database
Access NIH Metabolomics Workbench via REST API (4,200+ studies). Query metabolites, RefMet nomenclature, MS/NMR data, m/z searches, study metadata, for metabolomics and biomarker discovery.
foryourhealth111-pixel/Vibe-Skills 1,415
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esm
Comprehensive toolkit for protein language models including ESM3 (generative multimodal protein design across sequence, structure, and function) and ESM C (efficient protein embeddings and representations). Use this skill when working with protein sequences, structures, or function prediction; designing novel proteins; generating protein embeddings; performing inverse folding; or conducting protein engineering tasks. Supports both local model usage and cloud-based Forge API for scalable inference.
foryourhealth111-pixel/Vibe-Skills 1,415
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requesting-code-review
Use when completing tasks, implementing major features, or before merging to verify work meets requirements
foryourhealth111-pixel/Vibe-Skills 1,415
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treatment-plans
Generate concise (3-4 page), focused medical treatment plans in LaTeX/PDF format for all clinical specialties. Supports general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management. Includes SMART goal frameworks, evidence-based interventions with minimal text citations, regulatory compliance (HIPAA), and professional formatting. Prioritizes brevity and clinical actionability.
foryourhealth111-pixel/Vibe-Skills 1,415
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aios-data-engineer
Database Architect & Operations Engineer (Dara). Use for database design, schema architecture, Supabase configuration, RLS policies, migrations, query optimization, data modelin...
foryourhealth111-pixel/Vibe-Skills 1,415
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report-generator
高级报告生成专家，支持多格式输出、数据可视化和交互式报告生成。
foryourhealth111-pixel/Vibe-Skills 1,415
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tiledbvcf
Efficient storage and retrieval of genomic variant data using TileDB. Scalable VCF/BCF ingestion, incremental sample addition, compressed storage, parallel queries, and export capabilities for population genomics.
foryourhealth111-pixel/Vibe-Skills 1,415
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LQF_Machine_Learning_Expert_Guide
LQF Machine Learning Expert Guide - Auto-activating skill for ML/Statistical Modeling with Critical Discussion Mode.
Triggers on: machine learning, modeling, prediction, training, classification, regression, clustering, deep learning, neural network, model evaluation, feature engineering, hyperparameter tuning, overfitting, underfitting, baseline, ablation study, critique my approach, review my model, is this a good idea, should I use, what's wrong with, evaluate my solution, challenge my assumptions, discuss my approach
Engages in critical discussion with minimum 3 rounds of iterative refinement. Challenges both user proposals and own suggestions with fact-based critique. Demands evidence and baselines before accepting solutions.
foryourhealth111-pixel/Vibe-Skills 1,415
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networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing graph algorithms (shortest paths, centrality, clustering), detecting communities, generating synthetic networks, or visualizing network topologies. Applicable to social networks, biological networks, transportation systems, citation networks, and any domain involving pairwise relationships.
foryourhealth111-pixel/Vibe-Skills 1,415
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biorxiv-database
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
foryourhealth111-pixel/Vibe-Skills 1,415
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venue-templates
Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.
foryourhealth111-pixel/Vibe-Skills 1,415
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geniml
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), building consensus peaks (universes), or any ML-based analysis of genomic regions. Applies to BED file collections, scATAC-seq data, chromatin accessibility datasets, and region-based genomic feature learning.
foryourhealth111-pixel/Vibe-Skills 1,415
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pennylane
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google/Rigetti/IonQ. Best for variational algorithms (VQE, QAOA), quantum neural networks, and integration with PyTorch/JAX/TensorFlow. For hardware-specific optimizations use qiskit (IBM) or cirq (Google); for open quantum systems use qutip.
foryourhealth111-pixel/Vibe-Skills 1,415
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brainstorming
You MUST use this before any creative work - creating features, building components, adding functionality, or modifying behavior. Explores user intent, requirements and design before implementation.
foryourhealth111-pixel/Vibe-Skills 1,415
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gradient-methods
Problem-solving strategies for gradient methods in optimization
foryourhealth111-pixel/Vibe-Skills 1,415
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exploratory-data-analysis
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
foryourhealth111-pixel/Vibe-Skills 1,415