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Agent skills
ai-skills

Topic: ai-skills

5,410 skills in this topic.

hypothesis-generation Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses with predictions, propose mechanisms, and design experiments to test them. Follows scientific method framework. For open-ended ideation use scientific-brainstorming; for automated LLM-driven hypothesis testing on datasets use hypogenic.
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cosmic-database Access COSMIC cancer mutation database. Query somatic mutations, Cancer Gene Census, mutational signatures, gene fusions, for cancer research and precision oncology. Requires authentication.
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correlation-analyzer Correlation Analyzer - Auto-activating skill for Data Analytics. Triggers on: correlation analyzer, correlation analyzer Part of the Data Analytics skill category.
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aios-po Product Owner (Pax). Use for backlog management, story refinement, acceptance criteria, sprint planning, and prioritization decisions
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generating-test-reports Generate comprehensive test reports with metrics, coverage, and visualizations. Use when performing specialized testing. Trigger with phrases like "generate test report", "create test documentation", or "show test metrics".
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aios-devops GitHub Repository Manager & DevOps Specialist (Gage). Use for repository operations, version management, CI/CD, quality gates, and GitHub push operations. ONLY agent authorized...
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aios-dev Full Stack Developer (Dex). Use for code implementation, debugging, refactoring, and development best practices
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autonomous-builder Full-stack autonomous software development agent: handles design, implementation, testing, and deployment end-to-end. Auto-activates for project creation, feature development, bug fixing, code refactoring, or when user requests 'build', 'create', 'implement', 'develop', 'fix', or 'refactor' any software project.
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aios-pm Product Manager (Morgan). Use for PRD creation (greenfield and brownfield), epic creation and management, product strategy and vision, feature prioritization (MoSCoW, RICE), roa...
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aios-ux-design-expert UX/UI Designer & Design System Architect (Uma). Complete design workflow - user research, wireframes, design systems, token extraction, component building, and quality assurance
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cirq Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use qiskit; for quantum ML with autodiff use pennylane; for physics simulations use qutip.
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architecture-patterns Implement proven backend architecture patterns including Clean Architecture, Hexagonal Architecture, and Domain-Driven Design. Use when architecting complex backend systems or refactoring existing applications for better maintainability.
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biopython Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures, phylogenetics. For quick BLAST, use gget. For direct REST API, use pubmed-database.
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brenda-database Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
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cellxgene-census Query CZ CELLxGENE Census (61M+ cells). Filter by cell type/tissue/disease, retrieve expression data, integrate with scanpy/PyTorch, for population-scale single-cell analysis.
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skill-creator Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations.
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bioservices Primary Python tool for 40+ bioinformatics services. Preferred for multi-database workflows: UniProt, KEGG, ChEMBL, PubChem, Reactome, QuickGO. Unified API for queries, ID mapping, pathway analysis. For direct REST control, use individual database skills (uniprot-database, kegg-database).
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skill-installer Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos).
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alpha-vantage Access real-time and historical stock market data, forex rates, cryptocurrency prices, commodities, economic indicators, and 50+ technical indicators via the Alpha Vantage API. Use when fetching stock prices (OHLCV), company fundamentals (income statement, balance sheet, cash flow), earnings, options data, market news/sentiment, insider transactions, GDP, CPI, treasury yields, gold/silver/oil prices, Bitcoin/crypto prices, forex exchange rates, or calculating technical indicators (SMA, EMA, MACD, RSI, Bollinger Bands). Requires a free API key from alphavantage.co.
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aios-qa Test Architect & Quality Advisor (Quinn). Use for comprehensive test architecture review, quality gate decisions, and code improvement. Provides thorough analysis including requ...
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aios-sm Scrum Master (River). Use for user story creation from PRD, story validation and completeness checking, acceptance criteria definition, story refinement, sprint planning, backlo...
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algorithmic-art Creating algorithmic art using p5.js with seeded randomness and interactive parameter exploration. Use this when users request creating art using code, generative art, algorithmic art, flow fields, or particle systems. Create original algorithmic art rather than copying existing artists' work to avoid copyright violations.
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anomaly-detector Anomaly Detector - Auto-activating skill for Data Analytics. Triggers on: anomaly detector, anomaly detector Part of the Data Analytics skill category.
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anndata This skill should be used when working with annotated data matrices in Python, particularly for single-cell genomics analysis, managing experimental measurements with metadata, or handling large-scale biological datasets. Use when tasks involve AnnData objects, h5ad files, single-cell RNA-seq data, or integration with scanpy/scverse tools.
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